Lassa GPC (strain Josiah) bound to rabbit polyclonal base-targeting antibody Base-1
Brouwer PJM, Perrett HR, Nijhuis H, Lee W-H, Burger J, Lloyd NM, Himansu S, Beaumont T, Carfi A, Bukreyev A, Sanders RW, van Gils MJ, Ward AB
To Be Published
- Glycoprotein g1 (29 kDa, Protein from Lassa virus)
- Glycoprotein g2, 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase fusion protein (44 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Polyclonal antibody base-1 heavy chain (9 kDa, Protein from Oryctolagus cuniculus)
- Polyclonal antibody base-1 light chain (9 kDa, Protein from Oryctolagus cuniculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Polyclonal antibody base-1 heavy chain, polyclonal antibody base-1 light chain (Complex from Oryctolagus cuniculus)
- Heterotrimeric lassa gpc bound to heterodimeric rabbit polyclonal base-targeting antibody base-1 (Complex)
- Glycoprotein g1, glycoprotein g2, 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase fusion protein (Complex from Lassa virus)
Rabbit 80S ribosome as it decodes the Sec-UGA codon
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7zjw
Q-score: 0.514
Hilal T, Killam BY, Grozdanovic M, Dobosz-Bartoszek M, Loerke J, Burger J, Mielke T, Copeland PR, Simonovic M, Spahn CMT
Science (2022) 376 pp. 1338-1343 [ Pubmed: 35709277 DOI: doi:10.1126/science.abg3875 ]
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es10 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- Potassium ion (39 Da, Ligand)
- 40s ribosomal protein us9 (19 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el32 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- Gpx4 secis element (275 kDa, RNA from Rattus norvegicus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el31 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el28 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- Eefsec (67 kDa, Protein from Homo sapiens)
- 60s ribosomal protein ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- Secis binding protein 2 (95 kDa, Protein from Homo sapiens)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es19 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Sodium ion (22 Da, Ligand)
- Human ser-trna-sec (28 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
- 80s ribosome (Complex from Oryctolagus cuniculus)
- Ribosomal protein es26 (13 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Gpx4 secis element (Complex from Rattus norvegicus)
- Ser-trna-sec (Complex from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Crpv ires (Complex from Cricket paralysis virus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el42 (12 kDa, Protein from Oryctolagus cuniculus)
- 80s-selenosome (3 MDa, Complex)
- 60s ribosomal protein el22 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- Serine (105 Da, Ligand)
- 40s ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el24 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us5 (31 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el8 (30 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el30 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- Crpv ires (345 kDa, RNA from Cricket paralysis virus)
- 60s ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Water (18 Da, Ligand)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- Eefsec and secis binding protein 2 (Complex from Homo sapiens)
- 60s ribosomal protein el33 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el21 (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es4 (29 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
Rabbit 80S ribosome programmed with SECIS and SBP2
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7zjx
Q-score: 0.428
Hilal T, Killam BY, Grozdanovic M, Dobosz-Bartoszek M, Loerke J, Burger J, Mielke T, Copeland PR, Simonovic M, Spahn CMT
Science (2022) 376 pp. 1338-1343 [ Pubmed: 35709277 DOI: doi:10.1126/science.abg3875 ]
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Guanine nucleotide-binding protein subunit beta-2-like 1 (35 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es21 (9 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us9 (19 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (18 kDa, Protein from Oryctolagus cuniculus)
- Selenocysteine insertion sequence-binding protein 2 (Complex from Homo sapiens)
- 60s ribosomal protein ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- Selenocysteine insertion sequence-binding protein 2 (95 kDa, Protein from Homo sapiens)
- 60s ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- Gpx4 secis element (275 kDa, RNA from Rattus norvegicus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el28 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
- Crpv ires (52 kDa, RNA from Cricket paralysis virus)
- Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s13 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l30 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul2 (28 kDa, Protein from Oryctolagus cuniculus)
- 80s-sbp2-secis (3 MDa, Complex)
- Ribosomal protein (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es19 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s20 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el13 (24 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
- 80s ribosome (Complex from Oryctolagus cuniculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- Gpx4 secis element (Complex from Rattus norvegicus)
- 40s ribosomal protein es26 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- Crpv ires (Complex from Cricket paralysis virus)
- 40s ribosomal protein s15 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ubiquitin carboxyl extension protein 80 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el42 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el22 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us5 (31 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el8 (30 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s17 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us11 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6gz3
Q-score: 0.365
Flis J, Holm M, Rundlet EJ, Loerke J, Hilal T, Dabrowski M, Burger J, Mielke T, Blanchard SC, Spahn CMT, Budkevich TV
Cell Rep (2018) 25 pp. 2676-2688.e7 [ Pubmed: 30517857 DOI: doi:10.1016/j.celrep.2018.11.040 ]
- Ribosomal protein us19 (14 kDa, Protein from Rabbit)
- Ribosomal protein es17 (14 kDa, Protein from Rabbit)
- Ribosomal protein s28 (7 kDa, Protein from Rabbit)
- Ribosomal protein s11 (17 kDa, Protein from Rabbit)
- Ribosomal protein el40 (5 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l8 (27 kDa, Protein from Rabbit)
- Ribosomal protein rack 1 (34 kDa, Protein from Rabbit)
- Ribosomal protein ul10 (22 kDa, Protein from Rabbit)
- 40s ribosomal protein s7 (20 kDa, Protein from Rabbit)
- Ribosomal protein ul15 (16 kDa, Protein from Rabbit)
- Ribosomal protein ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es27 (9 kDa, Protein from Rabbit)
- Ribosomal protein ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es21 (8 kDa, Protein from Rabbit)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- Ribosome (Complex from Oryctolagus cuniculus)
- Ribosomal protein ul30 (27 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el34 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Rabbit)
- Ribosomal protein s27a (8 kDa, Protein from Rabbit)
- Ribosomal protein el42 (12 kDa, Protein from Rabbit)
- Ribosomal protein es4 (28 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Rabbit)
- Ribosomal protein el43 (10 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Rabbit)
- 40s ribosomal protein s12 (13 kDa, Protein from Rabbit)
- Ribosomal protein ul4 (41 kDa, Protein from Rabbit)
- Ribosomal protein el8 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Rabbit)
- Ribosomal protein el24 (14 kDa, Protein from Rabbit)
- Ribosomal protein us9 (15 kDa, Protein from Rabbit)
- Ribosomal protein es25 (9 kDa, Protein from Rabbit)
- Ribosomal protein es26 (11 kDa, Protein from Rabbit)
- Ribosomal protein el21 (18 kDa, Protein from Rabbit)
- Ribosomal protein l23 (13 kDa, Protein from Rabbit)
- Ribosomal protein el39 (6 kDa, Protein from Rabbit)
- Ribosomal protein us11 (14 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from Rabbit)
- Ribosomal protein el13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l12 (16 kDa, Protein from Rabbit)
- Ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es24 (14 kDa, Protein from Rabbit)
- Ribosomal protein us13 (16 kDa, Protein from Rabbit)
- 18s ribosomal rna (551 kDa, RNA from Rabbit)
- Ap/p-site trna (24 kDa, RNA from Rabbit)
- Ribosomal protein (24 kDa, Protein from Rabbit)
- 40s ribosomal protein s6 (26 kDa, Protein from Rabbit)
- Ribosomal protein el14 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us3 (24 kDa, Protein from Rabbit)
- Ribosomal protein us14 (6 kDa, Protein from Rabbit)
- Trna (Complex from Saccharomyces cerevisiae)
- Ribosomal protein el29 (7 kDa, Protein from Rabbit)
- Ribosomal protein ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic elongation factor 2 (eef2) (95 kDa, Protein from Rabbit)
- Ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es8 (24 kDa, Protein from Rabbit)
- Ribosomal protein l37 (9 kDa, Protein from Rabbit)
- Ribosomal protein el6 (22 kDa, Protein from Rabbit)
- Ribosomal protein es30 (6 kDa, Protein from Rabbit)
- Ribosomal protein ul3 (45 kDa, Protein from Rabbit)
- Ribosomal protein us5 (24 kDa, Protein from Rabbit)
- Ribosomal protein el32 (15 kDa, Protein from Rabbit)
- Ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el30 (11 kDa, Protein from Rabbit)
- Mrna (3 kDa, RNA from Enterobacteria phage SP6)
- Ribosomal protein el36 (11 kDa, Protein from Rabbit)
- 40s ribosomal protein s3a (24 kDa, Protein from Rabbit)
- Pe/e-site-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Ribosomal protein es10 (11 kDa, Protein from Rabbit)
- Ribosomal protein us10 (11 kDa, Protein from Rabbit)
- Ribosomal protein l26 (15 kDa, Protein from Rabbit)
- Ribosomal protein ul13 (22 kDa, Protein from Oryctolagus cuniculus)
- Mrna (Complex from Enterobacteria phage SP6)
- Ribosomal protein el33 (12 kDa, Protein from Rabbit)
- Ribosomal protein us15 (17 kDa, Protein from Rabbit)
- Translocation intermediate ti-post-1 (4 MDa, Complex)
- Ribosomal protein es19 (15 kDa, Protein from Rabbit)
- Ribosomal protein l11 (19 kDa, Protein from Rabbit)
- Ribosomal protein s5 (21 kDa, Protein from Rabbit)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Ribosomal protein el28 (13 kDa, Protein from Rabbit)
- Ribosomal protein ul18 (34 kDa, Protein from Rabbit)
- Ribosomal protein s15a (14 kDa, Protein from Rabbit)
- Ribosomal protein us2 (24 kDa, Protein from Rabbit)
- Ribosomal protein el31 (12 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein ul23 (13 kDa, Protein from Rabbit)
- Ribosomal protein el22 (11 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Rabbit)
- Ribosomal protein el41 (3 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6gz4
Q-score: 0.386
Flis J, Holm M, Rundlet EJ, Loerke J, Hilal T, Dabrowski M, Burger J, Mielke T, Blanchard SC, Spahn CMT, Budkevich TV
Cell Rep (2018) 25 pp. 2676-2688.e7 [ Pubmed: 30517857 DOI: doi:10.1016/j.celrep.2018.11.040 ]
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us2 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es19 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el40 (5 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es4 (28 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el6 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul11 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us9 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul10 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul30 (27 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul16 (24 kDa, Protein from Oryctolagus cuniculus)
- Ap/p-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein us10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul18 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el31 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el34 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us19 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul14 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es1 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el15 (24 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us3 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el30 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el28 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el24 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el8 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es12 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us4 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us11 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us12 (15 kDa, Protein from Oryctolagus cuniculus)
- Eukaryotic elongation factor 2 (eef2) (95 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es17 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el13 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul5 (19 kDa, Protein from Oryctolagus cuniculus)
- Pe/e-site-trna (24 kDa, RNA from Oryctolagus cuniculus)
- 18s ribosomal rna (551 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein es21 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us10 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es31 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es28 (24 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein us14 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul24 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us8 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el14 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es7 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el29 (7 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el18 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es8 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es24 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el32 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es6 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el37 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul13 (22 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es27 (9 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ti-post-2 (4 MDa, Complex from Oryctolagus cuniculus)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Ribosomal protein us17 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack 1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul2 (27 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el42 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es28 (7 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el27 (15 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein es30 (6 kDa, Protein from Oryctolagus cuniculus)
- Mrna (3 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein el22 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el41 (3 kDa, Protein from Oryctolagus cuniculus)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6gz5
Q-score: 0.38
Flis J, Holm M, Rundlet EJ, Loerke J, Hilal T, Dabrowski M, Burger J, Mielke T, Blanchard SC, Spahn CMT, Budkevich TV
Cell Rep (2018) 25 pp. 2676-2688.e7 [ Pubmed: 30517857 DOI: doi:10.1016/j.celrep.2018.11.040 ]
- Ribosomal protein us9 (15 kDa, Protein from rabbit)
- Ribosomal protein us15 (17 kDa, Protein from rabbit)
- Ribosomal protein ul29 (14 kDa, Protein from rabbit)
- Ribosomal protein ul3 (45 kDa, Protein from rabbit)
- Ribosomal protein ul1 (24 kDa, Protein from rabbit)
- Ribosomal protein el14 (16 kDa, Protein from rabbit)
- Ribosomal protein el15 (24 kDa, Protein from rabbit)
- Ribosomal protein el36 (11 kDa, Protein from rabbit)
- Ribosomal protein es8 (24 kDa, Protein from rabbit)
- Ribosomal protein es27 (9 kDa, Protein from rabbit)
- Ribosomal protein el27 (15 kDa, Protein from rabbit)
- 18s ribosomal rna (551 kDa, RNA from rabbit)
- Ribosomal protein el29 (7 kDa, Protein from rabbit)
- Ribosomal protein el28 (13 kDa, Protein from rabbit)
- Ribosomal protein us3 (24 kDa, Protein from rabbit)
- P/p-site-trna (24 kDa, RNA from rabbit)
- Ribosomal protein us5 (24 kDa, Protein from rabbit)
- Ribosomal protein es17 (14 kDa, Protein from rabbit)
- Ribosomal protein el33 (12 kDa, Protein from rabbit)
- Ribosomal protein el21 (18 kDa, Protein from rabbit)
- Ribosomal protein es26 (11 kDa, Protein from rabbit)
- Ribosomal protein ul4 (41 kDa, Protein from rabbit)
- Ribosomal protein el34 (12 kDa, Protein from rabbit)
- Eukaryotic elongation factor 2 (eef2) (95 kDa, Protein from rabbit)
- Translocation intermediate ti-post-3 (4 MDa, Complex)
- Ribosomal protein us10 (11 kDa, Protein from rabbit)
- Ribosomal protein ul13 (22 kDa, Protein from rabbit)
- Ribosomal protein el40 (5 kDa, Protein from rabbit)
- Ribosomal protein es21 (8 kDa, Protein from rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from rabbit)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us11 (14 kDa, Protein from rabbit)
- Translocation intermediate ti-post-3 (Complex from Saccharomyces cerevisiae)
- Ribosomal protein ul2 (27 kDa, Protein from rabbit)
- 28s ribosomal rna (1 MDa, RNA from rabbit)
- Ribosomal protein es25 (9 kDa, Protein from rabbit)
- Ribosomal protein el31 (12 kDa, Protein from rabbit)
- Ribosomal protein us8 (14 kDa, Protein from rabbit)
- Ribosomal protein ul30 (27 kDa, Protein from rabbit)
- Ribosomal protein el19 (21 kDa, Protein from rabbit)
- Ribosomal protein el13 (23 kDa, Protein from rabbit)
- Ribosomal protein el37 (9 kDa, Protein from rabbit)
- Ribosomal protein el6 (22 kDa, Protein from rabbit)
- Ribosomal protein us12 (15 kDa, Protein from rabbit)
- Ribosomal protein el32 (15 kDa, Protein from rabbit)
- Ribosomal protein el43 (10 kDa, Protein from rabbit)
- Ribosomal protein el30 (11 kDa, Protein from rabbit)
- Ribosomal protein us2 (24 kDa, Protein from rabbit)
- Ribosomal protein ul6 (21 kDa, Protein from rabbit)
- Ribosomal protein el24 (14 kDa, Protein from rabbit)
- 5s ribosomal rna (38 kDa, RNA from rabbit)
- Ribosomal protein es4 (28 kDa, Protein from rabbit)
- Ribosomal protein us13 (16 kDa, Protein from rabbit)
- Ribosomal protein ul11 (16 kDa, Protein from rabbit)
- Ribosomal protein us17 (17 kDa, Protein from rabbit)
- Ribosomal protein ul10 (22 kDa, Protein from rabbit)
- Ribosomal protein es10 (11 kDa, Protein from rabbit)
- Ribosomal protein us7 (21 kDa, Protein from rabbit)
- E/e-site-trna (24 kDa, RNA from baker's yeast)
- Translocation intermediate ti-post-3 (Complex from Enterobacteria phage SP6)
- Ribosomal protein el18 (21 kDa, Protein from rabbit)
- Ribosomal protein es24 (14 kDa, Protein from rabbit)
- Ribosomal protein es30 (6 kDa, Protein from rabbit)
- Translocation intermediate ti-post-3 (Complex from Oryctolagus cuniculus)
- Ribosomal protein ul16 (24 kDa, Protein from rabbit)
- Mrna (3 kDa, RNA from Enterobacteria phage SP6)
- Ribosomal protein ul24 (15 kDa, Protein from rabbit)
- Ribosomal protein ul22 (17 kDa, Protein from rabbit)
- Ribosomal protein es12 (13 kDa, Protein from rabbit)
- Ribosomal protein ul5 (19 kDa, Protein from rabbit)
- Ribosomal protein ul18 (34 kDa, Protein from rabbit)
- Ribosomal protein us4 (21 kDa, Protein from rabbit)
- Ribosomal protein ul15 (16 kDa, Protein from rabbit)
- Ribosomal protein es6 (26 kDa, Protein from rabbit)
- Ribosomal protein ul14 (13 kDa, Protein from rabbit)
- Ribosomal protein rack 1 (34 kDa, Protein from rabbit)
- Ribosomal protein el8 (26 kDa, Protein from rabbit)
- Ribosomal protein el22 (11 kDa, Protein from rabbit)
- Ribosomal protein us19 (14 kDa, Protein from rabbit)
- Ribosomal protein es19 (15 kDa, Protein from rabbit)
- Ribosomal protein el41 (3 kDa, Protein from rabbit)
- Ribosomal protein es7 (20 kDa, Protein from rabbit)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Ribosomal protein el39 (6 kDa, Protein from rabbit)
- Ribosomal protein es1 (24 kDa, Protein from rabbit)
- Ribosomal protein es28 (7 kDa, Protein from rabbit)
- Ribosomal protein ul23 (13 kDa, Protein from rabbit)
- Ribosomal protein us14 (6 kDa, Protein from Enterobacteria phage SP6)
- Ribosomal protein el20 (20 kDa, Protein from rabbit)
- Ribosomal protein el42 (12 kDa, Protein from rabbit)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein es31 (8 kDa, Protein from rabbit)
- Ribosomal protein el38 (8 kDa, Protein from rabbit)
Mammalian 80S HCV-IRES complex, Classical
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 5flx
Q-score: 0.261
Yamamoto H, Collier M, Loerke J, Ismer J, Schmidt A, Hilal T, Sprink T, Yamamoto K, Mielke T, Burger J, Shaikh TR, Dabrowski M, Hildebrand PW, Scheerer P, Spahn CMT
EMBO J (2015) 34 pp. 3042-3058 [ DOI: doi:10.15252/embj.201592469 Pubmed: 26604301 ]
- 80s ribosome (4 MDa, Complex from Oryctolagus cuniculus)
- Mammalian 80s-hcv-ires complex, classical (4 MDa, Sample)
- Hcv-ires (162 kDa, RNA from Hepatitis C virus)
Mammalian 80S-HCV-IRES initiation complex with eIF5B PRE-like state
Resolution: 8.9 Å
EM Method: Single-particle
Fitted PDBs: 4ujd
Q-score: 0.14
Yamamoto H, Unbehaun A, Loerke J, Behrmann E, Collier M, Burger J, Mielke T, Spahn CMT
Nat Struct Mol Biol (2014) 21 pp. 721-727 [ DOI: doi:10.1038/NSMB.2859 Pubmed: 25064512 ]
- 80s ribosome (4 MDa, Complex from Oryctolagus cuniculus)
- Mammalian translation initiation 80s hcv-ires complex with eif5b; pre-like state (4 MDa, Sample)
- Trna (2 kDa, RNA from Oryctolagus cuniculus)
- Hcv-ires (162 kDa, RNA from Hepatitis C virus)
- Eif5b (160 kDa, Protein from Oryctolagus cuniculus)
Mammalian 80S-HCV-IRES initiation complex with eIF5B POST-like state
Resolution: 9.5 Å
EM Method: Single-particle
Fitted PDBs: 4ujc
Q-score: 0.14
Yamamoto H, Unbehaun A, Loerke J, Behrmann E, Collier M, Burger J, Mielke T, Spahn CMT
Nat Struct Mol Biol (2014) 21 pp. 721-727 [ DOI: doi:10.1038/NSMB.2859 Pubmed: 25064512 ]
- 80s ribosome (4 MDa, Complex from Oryctolagus cuniculus)
- Mammalian translation initiation 80s hcv-ires complex with eif5b; post-like state (4 MDa, Sample)
- Trna (2 kDa, RNA from Oryctolagus cuniculus)
- Hcv-ires (162 kDa, RNA from Hepatitis C virus)
- Eif5b (160 kDa, Protein from Oryctolagus cuniculus)