map of the RNA polymerase lambda-based antitermination complex solved by cryo-EM
Resolution: 9.8 Å
EM Method: Single-particle
Fitted PDBs: 5ms0
Q-score: 0.069
Said N, Krupp F, Anedchenko E, Santos KF, Dybkov O, Huang YH, Lee CT, Loll B, Behrmann E, Burger J, Mielke T, Loerke J, Urlaub H, Spahn CMT, Weber G, Wahl MC
Nat Microbiol (2017) 2 pp. 17062-17062 [ DOI: doi:10.1038/nmicrobiol.2017.62 Pubmed: 28452979 ]
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- Rna transcription bubble (4 kDa, RNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Antitermination protein n (9 kDa, Protein from Escherichia phage lambda)
- Dnaii (11 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Transcription antitermination protein nusb (15 kDa, Protein from Escherichia coli K-12)
- Nascent rna (9 kDa, RNA from Escherichia coli)
- Transcription termination/antitermination protein nusa (55 kDa, Protein from Escherichia coli K-12)
- Lambdan-dependent antitermination complex (Complex from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli K-12)
- Dnai (8 kDa, DNA from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit beta' (156 kDa, Protein from Escherichia coli K-12)
- Transcription termination/antitermination protein nusg (20 kDa, Protein from Escherichia coli K-12)
Mammalian 80S-HCV-IRES initiation complex with eIF5B PRE-like state
Resolution: 8.9 Å
EM Method: Single-particle
Fitted PDBs: 4ujd
Q-score: 0.14
Yamamoto H, Unbehaun A, Loerke J, Behrmann E, Collier M, Burger J, Mielke T, Spahn CMT
Nat Struct Mol Biol (2014) 21 pp. 721-727 [ Pubmed: 25064512 DOI: doi:10.1038/NSMB.2859 ]
- Hcv-ires (162 kDa, RNA from Hepatitis C virus)
- Mammalian translation initiation 80s hcv-ires complex with eif5b; pre-like state (4 MDa, Sample)
- 80s ribosome (4 MDa, Complex from Oryctolagus cuniculus)
- Trna (2 kDa, RNA from Oryctolagus cuniculus)
- Eif5b (160 kDa, Protein from Oryctolagus cuniculus)
Mammalian 80S-HCV-IRES initiation complex with eIF5B POST-like state
Resolution: 9.5 Å
EM Method: Single-particle
Fitted PDBs: 4ujc
Q-score: 0.14
Yamamoto H, Unbehaun A, Loerke J, Behrmann E, Collier M, Burger J, Mielke T, Spahn CMT
Nat Struct Mol Biol (2014) 21 pp. 721-727 [ Pubmed: 25064512 DOI: doi:10.1038/NSMB.2859 ]
- Hcv-ires (162 kDa, RNA from Hepatitis C virus)
- 80s ribosome (4 MDa, Complex from Oryctolagus cuniculus)
- Trna (2 kDa, RNA from Oryctolagus cuniculus)
- Eif5b (160 kDa, Protein from Oryctolagus cuniculus)
- Mammalian translation initiation 80s hcv-ires complex with eif5b; post-like state (4 MDa, Sample)