Coxsackievirus A9 bound with CL213.
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 9fp5
Q-score: 0.585
Tammaro C, Plavec Z, Myllymaki L, Mitchell C, Consalvi S, Biava M, Ciogli A, Domanska A, Leppilampi V, Buckner C, Manetto S, Scio P, Coluccia A, Laajala M, Dondio GM, Bigogno C, Marjomaki V, Butcher SJ, Poce G
J Med Chem (2024) 67 pp. 17144-17161 [ Pubmed: 39292620 DOI: doi:10.1021/acs.jmedchem.4c00701 ]
- Palmitic acid (256 Da, Ligand)
- Capsid protein vp2 (28 kDa, Protein from Coxsackievirus A9)
- Capsid protein vp4 (7 kDa, Protein from Coxsackievirus A9)
- Human coxsackievirus a9 (strain griggs) (8 MDa, Virus from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp1 (33 kDa, Protein from Coxsackievirus A9)
- Myristic acid (228 Da, Ligand)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus A9)
Resolution: 2.15 Å
EM Method: Single-particle
Fitted PDBs: 9fjc
Q-score: 0.687
Soppela S, Plavec Z, Grohn S, Jartti M, Oikarinen S, Laajala M, Marjomaki V, Butcher SJ, Hankaniemi MM
Res Sq (2024) [ DOI: doi:10.21203/rs.3.rs-4545395/v1 Pubmed: 38978565 ]
- Capsid protein vp1 (25 kDa, Protein from Coxsackievirus B1)
- Palmitic acid (256 Da, Ligand)
- Coxsackievirus b1 (Virus from Coxsackievirus B1)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus B1)
- Capsid protein vp2 (27 kDa, Protein from Coxsackievirus B1)
- Capsid protein vp4 (1 kDa, Protein from Coxsackievirus B1)
Resolution: 2.15 Å
EM Method: Single-particle
Fitted PDBs: 9fjd
Q-score: 0.636
Soppela S, Plavec Z, Grohn S, Jartti M, Oikarinen S, Laajala M, Marjomaki V, Butcher SJ, Hankaniemi MM
Res Sq (2024) [ DOI: doi:10.21203/rs.3.rs-4545395/v1 Pubmed: 38978565 ]
- Capsid protein vp3 (25 kDa, Protein from Coxsackievirus B1)
- Capsid protein vp1 (25 kDa, Protein from Coxsackievirus B1)
- Coxsackievirus b1 (Virus from Coxsackievirus B1)
- Capsid protein vp2 (27 kDa, Protein from Coxsackievirus B1)
Tick-borne encephalitis virus (strain HYPR) immature particle
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ Pubmed: 38959313 DOI: doi:10.1126/sciadv.adl1888 ]
Tick-borne encephalitis virus (strain Neudoerfl) immature particle
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ Pubmed: 38959313 DOI: doi:10.1126/sciadv.adl1888 ]
Trimeric prM/E spike of Tick-borne encephalitis virus immature particle
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8puv
Q-score: 0.446
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ Pubmed: 38959313 DOI: doi:10.1126/sciadv.adl1888 ]
- Envelope protein e (53 kDa, Protein from Tick-borne encephalitis virus)
- Protein prm (18 kDa, Protein from Tick-borne encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Tick-borne encephalitis virus (Virus from Tick-borne encephalitis virus)
Tick-borne encephalitis virus Kuutsalo-14 prM3E3 trimer
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8ppq
Q-score: 0.334
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ Pubmed: 38959313 DOI: doi:10.1126/sciadv.adl1888 ]
- Envelope protein e (53 kDa, Protein from Tick-borne encephalitis virus)
- Protein prm (18 kDa, Protein from Tick-borne encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Tick-borne encephalitis virus (Virus from Tick-borne encephalitis virus)
Tobacco mosaic virus from scanning transmission electron microscopy at CSA=2.0 mrad
Henderikx RJM, Mann D, Domanska A, Dong J, Shahzad S, Lak B, Filopoulou A, Ludig D, Grininger M, Momoh J, Laanto E, Oksanen HM, Bisikalo K, Williams PA, Butcher SJ, Peters PJ, Beulen BWAMM
Acta Crystallogr D Struct Biol (2024) 80 pp. 232-246 [ DOI: doi:10.1107/S2059798324001852 Pubmed: 38488730 ]
Resolution: 10.3 Å
EM Method: Single-particle
Fitted PDBs: 8bnr
Q-score: 0.11
Sah-Teli SK, Pinkas M, Hynonen MJ, Butcher SJ, Wierenga RK, Novacek J, Venkatesan R
Structure (2023) 31 pp. 812- [ Pubmed: 37192613 DOI: doi:10.1016/j.str.2023.04.011 ]
- 3-ketoacyl-coa thiolase fadi (48 kDa, Protein from Escherichia coli K-12)
- Anectfe octamer (Complex from Escherichia coli)
- Fatty acid oxidation complex subunit alpha (77 kDa, Protein from Escherichia coli K-12)
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 8bnu
Q-score: 0.444
Sah-Teli SK, Pinkas M, Hynonen MJ, Butcher SJ, Wierenga RK, Novacek J, Venkatesan R
Structure (2023) 31 pp. 812- [ Pubmed: 37192613 DOI: doi:10.1016/j.str.2023.04.011 ]
- 3-ketoacyl-coa thiolase fadi (46 kDa, Protein from Escherichia coli K-12)
- Fatty acid oxidation complex subunit alpha (76 kDa, Protein from Escherichia coli K-12)
- Anectfe tetrameric (Complex from Escherichia coli)