Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 9fk0
Q-score: 0.415
Rosendal E, Bisikalo K, Willekens SM, Lindgren M, Holoubek J, Svoboda P, Lappalainen A, Konighofer E, Mirgorodskaya E, Norden R, Morini F, Rosenbaum W, Ruzek D, Ahlgren U, Anastasina M, Merits A, Butcher SJ, Nilsson E, Overby AK
bioRxiv (2024) [ DOI: doi:10.1101/2024.10.16.618642 ]
- Envelope protein e (Complex from tick-borne encephalitis virus-European subtype)
- Lgtv with tbev prme (Virus)
- 1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphocholine (758 Da, Ligand)
- Genome polyprotein (8 kDa, Protein from tick-borne encephalitis virus-European subtype)
- Small envelope protein m (Complex from tick-borne encephalitis virus-European subtype)
- Genome polyprotein,envelope protein e (53 kDa, Protein from Langat virus (strain TP21))
LGTV TP21. Langat virus, strain TP21
Resolution: 3.82 Å
EM Method: Single-particle
Fitted PDBs: 9foj
Q-score: 0.332
Rosendal E, Bisikalo K, Willekens SM, Lindgren M, Holoubek J, Svoboda P, Lappalainen A, Konighofer E, Mirgorodskaya E, Norden R, Morini F, Rosenbaum W, Ruzek D, Ahlgren U, Anastasina M, Merits A, Butcher SJ, Nilsson E, Overby AK
bioRxiv (2024) [ DOI: doi:10.1101/2024.10.16.618642 ]
- 1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphocholine (758 Da, Ligand)
- Envelope protein e (53 kDa, Protein from Langat virus (strain TP21))
- Small envelope protein m (8 kDa, Protein from Langat virus (strain TP21))
- Langat virus (strain tp21) (Virus from Langat virus (strain TP21))
Coxsackievirus A9 bound with compound 20 (CL300)
Resolution: 2.26 Å
EM Method: Single-particle
Fitted PDBs: 8s7j
Q-score: 0.598
Tammaro C, Plavec Z, Myllymaki L, Mitchell C, Consalvi S, Biava M, Ciogli A, Domanska A, Leppilampi V, Buckner C, Manetto S, Scio P, Coluccia A, Laajala M, Dondio GM, Bigogno C, Marjomaki V, Butcher SJ, Poce G
J Med Chem (2024) 67 pp. 17144-17161 [ Pubmed: 39292620 DOI: doi:10.1021/acs.jmedchem.4c00701 ]
- Capsid protein vp4 (7 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp2 (28 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Human coxsackievirus a9 (strain griggs) (8 MDa, Virus from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp1 (33 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp3 (26 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Myristic acid (228 Da, Ligand)
- ~{n}-[(4-methoxyphenyl)methyl]-4-[(4-methylpiperazin-1-yl)methyl]aniline (325 Da, Ligand)
Coxsackievirus A9 bound with compound 14 (CL275)
Resolution: 2.31 Å
EM Method: Single-particle
Fitted PDBs: 9exi
Q-score: 0.584
Tammaro C, Plavec Z, Myllymaki L, Mitchell C, Consalvi S, Biava M, Ciogli A, Domanska A, Leppilampi V, Buckner C, Manetto S, Scio P, Coluccia A, Laajala M, Dondio GM, Bigogno C, Marjomaki V, Butcher SJ, Poce G
J Med Chem (2024) 67 pp. 17144-17161 [ Pubmed: 39292620 DOI: doi:10.1021/acs.jmedchem.4c00701 ]
- 4-[(4-methylpiperazin-1-yl)methyl]-n-[[4-(trifluoromethyl)phenyl]methyl]aniline (363 Da, Ligand)
- Capsid protein vp2 (27 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp4 (7 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp1 (32 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Coxsackievirus a9 (8 MDa, Virus from Coxsackievirus A9)
- Capsid protein vp3 (26 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Myristic acid (228 Da, Ligand)
Coxsackievirus A9 bound with compound 17 (CL301)
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 9fcz
Q-score: 0.573
Tammaro C, Plavec Z, Myllymaki L, Mitchell C, Consalvi S, Biava M, Ciogli A, Domanska A, Leppilampi V, Buckner C, Manetto S, Scio P, Coluccia A, Laajala M, Dondio GM, Bigogno C, Marjomaki V, Butcher SJ, Poce G
J Med Chem (2024) 67 pp. 17144-17161 [ Pubmed: 39292620 DOI: doi:10.1021/acs.jmedchem.4c00701 ]
- ~{n}-[(3-fluorophenyl)methyl]-4-[(4-methylpiperazin-1-yl)methyl]aniline (313 Da, Ligand)
- Capsid protein vp2 (27 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp4 (7 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Human coxsackievirus a9 (strain griggs) (8 MDa, Virus from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp1 (32 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp3 (26 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Myristic acid (228 Da, Ligand)
Coxsackievirus A9 bound with compound 15 (CL278)
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 9fo2
Q-score: 0.577
Tammaro C, Plavec Z, Myllymaki L, Mitchell C, Consalvi S, Biava M, Ciogli A, Domanska A, Leppilampi V, Buckner C, Manetto S, Scio P, Coluccia A, Laajala M, Dondio GM, Bigogno C, Marjomaki V, Butcher SJ, Poce G
J Med Chem (2024) 67 pp. 17144-17161 [ Pubmed: 39292620 DOI: doi:10.1021/acs.jmedchem.4c00701 ]
- Capsid protein vp2 (27 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- ~{n}-[(4-fluorophenyl)methyl]-4-[(4-methylpiperazin-1-yl)methyl]aniline (313 Da, Ligand)
- Capsid protein vp4 (7 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp1 (33 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Coxsackievirus a9 (8 MDa, Virus from Coxsackievirus A9)
- Capsid protein vp3 (26 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Myristic acid (228 Da, Ligand)
Coxsackievirus A9 bound with CL213.
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 9fp5
Q-score: 0.585
Tammaro C, Plavec Z, Myllymaki L, Mitchell C, Consalvi S, Biava M, Ciogli A, Domanska A, Leppilampi V, Buckner C, Manetto S, Scio P, Coluccia A, Laajala M, Dondio GM, Bigogno C, Marjomaki V, Butcher SJ, Poce G
J Med Chem (2024) 67 pp. 17144-17161 [ Pubmed: 39292620 DOI: doi:10.1021/acs.jmedchem.4c00701 ]
- Palmitic acid (256 Da, Ligand)
- Capsid protein vp2 (28 kDa, Protein from Coxsackievirus A9)
- Capsid protein vp4 (7 kDa, Protein from Coxsackievirus A9)
- Human coxsackievirus a9 (strain griggs) (8 MDa, Virus from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp1 (33 kDa, Protein from Coxsackievirus A9)
- Myristic acid (228 Da, Ligand)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus A9)
Resolution: 2.15 Å
EM Method: Single-particle
Fitted PDBs: 9fjc
Q-score: 0.687
Soppela S, Plavec Z, Grohn S, Jartti M, Oikarinen S, Laajala M, Marjomaki V, Butcher SJ, Hankaniemi MM
Res Sq (2024) [ DOI: doi:10.21203/rs.3.rs-4545395/v1 Pubmed: 38978565 ]
- Capsid protein vp1 (25 kDa, Protein from Coxsackievirus B1)
- Palmitic acid (256 Da, Ligand)
- Coxsackievirus b1 (Virus from Coxsackievirus B1)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus B1)
- Capsid protein vp2 (27 kDa, Protein from Coxsackievirus B1)
- Capsid protein vp4 (1 kDa, Protein from Coxsackievirus B1)
Trimeric prM/E spike of Tick-borne encephalitis virus immature particle
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8puv
Q-score: 0.446
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ Pubmed: 38959313 DOI: doi:10.1126/sciadv.adl1888 ]
- Envelope protein e (53 kDa, Protein from Tick-borne encephalitis virus)
- Protein prm (18 kDa, Protein from Tick-borne encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Tick-borne encephalitis virus (Virus from Tick-borne encephalitis virus)
Tick-borne encephalitis virus Kuutsalo-14 prM3E3 trimer
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8ppq
Q-score: 0.334
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ Pubmed: 38959313 DOI: doi:10.1126/sciadv.adl1888 ]
- Envelope protein e (53 kDa, Protein from Tick-borne encephalitis virus)
- Protein prm (18 kDa, Protein from Tick-borne encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Tick-borne encephalitis virus (Virus from Tick-borne encephalitis virus)