Coxsackievirus A9 bound with compound 15 (CL278)
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 9fo2
Q-score: 0.577
Tammaro C, Plavec Z, Myllymaki L, Mitchell C, Consalvi S, Biava M, Ciogli A, Domanska A, Leppilampi V, Buckner C, Manetto S, Scio P, Coluccia A, Laajala M, Dondio GM, Bigogno C, Marjomaki V, Butcher SJ, Poce G
J Med Chem (2024) 67 pp. 17144-17161 [ Pubmed: 39292620 DOI: doi:10.1021/acs.jmedchem.4c00701 ]
- Capsid protein vp2 (27 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- ~{n}-[(4-fluorophenyl)methyl]-4-[(4-methylpiperazin-1-yl)methyl]aniline (313 Da, Ligand)
- Capsid protein vp4 (7 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp1 (33 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Coxsackievirus a9 (8 MDa, Virus from Coxsackievirus A9)
- Capsid protein vp3 (26 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Myristic acid (228 Da, Ligand)
Coxsackievirus A9 bound with compound 19 (CL313)
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 9fo5
Q-score: 0.544
Tammaro C, Plavec Z, Myllymaki L, Mitchell C, Consalvi S, Biava M, Ciogli A, Domanska A, Leppilampi V, Buckner C, Manetto S, Scio P, Coluccia A, Laajala M, Dondio GM, Bigogno C, Marjomaki V, Butcher SJ, Poce G
J Med Chem (2024) 67 pp. 17144-17161 [ Pubmed: 39292620 DOI: doi:10.1021/acs.jmedchem.4c00701 ]
- Capsid protein vp4 (7 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp2 (28 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp1 (33 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- ~{n}-[[3,4-bis(fluoranyl)phenyl]methyl]-4-[(4-methylpiperazin-1-yl)methyl]aniline (331 Da, Ligand)
- Coxsackievirus a9 (8 MDa, Virus from Coxsackievirus A9)
- Capsid protein vp3 (26 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
Tick-borne encephalitis virus (strain HYPR) immature particle
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ Pubmed: 38959313 DOI: doi:10.1126/sciadv.adl1888 ]
Tick-borne encephalitis virus (strain Neudoerfl) immature particle
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ Pubmed: 38959313 DOI: doi:10.1126/sciadv.adl1888 ]
Trimeric prM/E spike of Tick-borne encephalitis virus immature particle
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8puv
Q-score: 0.446
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ Pubmed: 38959313 DOI: doi:10.1126/sciadv.adl1888 ]
- Envelope protein e (53 kDa, Protein from Tick-borne encephalitis virus)
- Protein prm (18 kDa, Protein from Tick-borne encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Tick-borne encephalitis virus (Virus from Tick-borne encephalitis virus)
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 8bnu
Q-score: 0.444
Sah-Teli SK, Pinkas M, Hynonen MJ, Butcher SJ, Wierenga RK, Novacek J, Venkatesan R
Structure (2023) 31 pp. 812- [ Pubmed: 37192613 DOI: doi:10.1016/j.str.2023.04.011 ]
- 3-ketoacyl-coa thiolase fadi (46 kDa, Protein from Escherichia coli K-12)
- Fatty acid oxidation complex subunit alpha (76 kDa, Protein from Escherichia coli K-12)
- Anectfe tetrameric (Complex from Escherichia coli)
Escherichia coli anaerobic fatty acid beta oxidation trifunctional enzyme (anEcTFE) trimeric complex
Resolution: 4.08 Å
EM Method: Single-particle
Fitted PDBs: 8brj
Q-score: 0.132
Sah-Teli SK, Pinkas M, Hynonen MJ, Butcher SJ, Wierenga RK, Novacek J, Venkatesan R
Structure (2023) 31 pp. 812- [ Pubmed: 37192613 DOI: doi:10.1016/j.str.2023.04.011 ]
- Anectfe trimer (Complex from Escherichia coli)
- Fatty acid oxidation complex subunit alpha (77 kDa, Protein from Escherichia coli)
- 3-ketoacyl-coa thiolase fadi (48 kDa, Protein from Escherichia coli)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8at5
Q-score: 0.602
Domanska A, Plavec Z, Ruokolainen V, Loflund B, Marjomaki V, Butcher SJ
J Virol (2022) 96 pp. e0136722-e0136722 [ Pubmed: 36448797 DOI: doi:10.1128/jvi.01367-22 ]
- Palmitic acid (256 Da, Ligand)
- Capsid protein vp2 (28 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp4 (7 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp1 (33 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Coxsackievirus a9 (8 MDa, Virus from Coxsackievirus A9)
- Capsid protein vp3 (26 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Myristic acid (228 Da, Ligand)
Expanded Coxsackievirus A9 after 0.01% faf-BSA treatment
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8aw6
Q-score: 0.521
Domanska A, Plavec Z, Ruokolainen V, Loflund B, Marjomaki V, Butcher SJ
J Virol (2022) 96 pp. e0136722-e0136722 [ Pubmed: 36448797 DOI: doi:10.1128/jvi.01367-22 ]
- Capsid protein vp1 (33 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Coxsackievirus a9 (8 MDa, Virus from Coxsackievirus A9)
- Capsid protein vp3 (26 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp2 (28 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
Expanded Coxsackievirus A9 after treatment with endosomal ionic buffer
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8axx
Q-score: 0.541
Domanska A, Plavec Z, Ruokolainen V, Loflund B, Marjomaki V, Butcher SJ
J Virol (2022) 96 pp. e0136722-e0136722 [ Pubmed: 36448797 DOI: doi:10.1128/jvi.01367-22 ]
- Capsid protein vp1 (33 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Coxsackievirus a9 (8 MDa, Virus from Coxsackievirus A9)
- Capsid protein vp3 (26 kDa, Protein from Human coxsackievirus A9 (strain Griggs))
- Capsid protein vp2 (28 kDa, Protein from Human coxsackievirus A9 (strain Griggs))