Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 1
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 8ady
Q-score: 0.122
Chen Q, Menon R, Calder LJ, Tolar P, Rosenthal PB
Nat Commun (2022) 13 pp. 6314-6314 [ DOI: doi:10.1038/s41467-022-34090-2 Pubmed: 36274064 ]
- Full-length human igm pentamer (Complex from Homo sapiens)
- Igm c2-domain from mouse (12 kDa, Protein from Homo sapiens)
- Immunoglobulin j chain (15 kDa, Protein from Homo sapiens)
- Igm fab, light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Immunoglobulin heavy constant mu (41 kDa, Protein from Homo sapiens)
- Igm fab, heavy chain (24 kDa, Protein from Homo sapiens)
Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 2
Resolution: 6.7 Å
EM Method: Single-particle
Fitted PDBs: 8adz
Q-score: 0.104
Chen Q, Menon R, Calder LJ, Tolar P, Rosenthal PB
Nat Commun (2022) 13 pp. 6314-6314 [ DOI: doi:10.1038/s41467-022-34090-2 Pubmed: 36274064 ]
- Full-length human igm pentamer (Complex from Homo sapiens)
- Igm c2-domain from mouse (12 kDa, Protein from Homo sapiens)
- Immunoglobulin j chain (15 kDa, Protein from Homo sapiens)
- Igm fab, light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Immunoglobulin heavy constant mu (41 kDa, Protein from Homo sapiens)
- Igm fab, heavy chain (24 kDa, Protein from Homo sapiens)
Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 3
Resolution: 7.1 Å
EM Method: Single-particle
Fitted PDBs: 8ae0
Q-score: 0.104
Chen Q, Menon R, Calder LJ, Tolar P, Rosenthal PB
Nat Commun (2022) 13 pp. 6314-6314 [ DOI: doi:10.1038/s41467-022-34090-2 Pubmed: 36274064 ]
- Full-length human igm pentamer (Complex from Homo sapiens)
- Igm c2-domain from mouse (12 kDa, Protein from Homo sapiens)
- Immunoglobulin j chain (15 kDa, Protein from Homo sapiens)
- Igm fab, light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Immunoglobulin heavy constant mu (41 kDa, Protein from Homo sapiens)
- Igm fab, heavy chain (24 kDa, Protein from Homo sapiens)
Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 5
Resolution: 8.5 Å
EM Method: Single-particle
Fitted PDBs: 8ae2
Q-score: 0.096
Chen Q, Menon R, Calder LJ, Tolar P, Rosenthal PB
Nat Commun (2022) 13 pp. 6314-6314 [ DOI: doi:10.1038/s41467-022-34090-2 Pubmed: 36274064 ]
- Full-length human igm pentamer (Complex from Homo sapiens)
- Igm c2-domain from mouse (12 kDa, Protein from Homo sapiens)
- Immunoglobulin j chain (15 kDa, Protein from Homo sapiens)
- Igm fab, light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Immunoglobulin heavy constant mu (41 kDa, Protein from Homo sapiens)
- Igm fab, heavy chain (24 kDa, Protein from Homo sapiens)
Cryo-EM structure of full-length human immunoglobulin M - F(ab')2 conformation 4
Resolution: 6.8 Å
EM Method: Single-particle
Fitted PDBs: 8ae3
Q-score: 0.115
Chen Q, Menon R, Calder LJ, Tolar P, Rosenthal PB
Nat Commun (2022) 13 pp. 6314-6314 [ DOI: doi:10.1038/s41467-022-34090-2 Pubmed: 36274064 ]
- Full-length human igm pentamer (Complex from Homo sapiens)
- Igm c2-domain from mouse (12 kDa, Protein from Homo sapiens)
- Immunoglobulin j chain (15 kDa, Protein from Homo sapiens)
- Igm fab, light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Immunoglobulin heavy constant mu (41 kDa, Protein from Homo sapiens)
- Igm fab, heavy chain (24 kDa, Protein from Homo sapiens)
X-31 Hemagglutinin Precursor HA0 at pH 7.5
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7zj6
Q-score: 0.591
Garcia-Moro E, Zhang J, Calder LJ, Brown NR, Gamblin SJ, Skehel JJ, Rosenthal PB
PNAS (2022) 119 pp. e2208011119-e2208011119 [ DOI: doi:10.1073/pnas.2208011119 Pubmed: 35939703 ]
X-31 Hemagglutinin Precursor HA0 at pH 4.8
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 7zj7
Q-score: 0.352
Garcia-Moro E, Zhang J, Calder LJ, Brown NR, Gamblin SJ, Skehel JJ, Rosenthal PB
PNAS (2022) 119 pp. e2208011119-e2208011119 [ DOI: doi:10.1073/pnas.2208011119 Pubmed: 35939703 ]
X-31 Hemagglutinin Precursor HA0 at pH 7.5 after reneutralization
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7zj8
Q-score: 0.522
Garcia-Moro E, Zhang J, Calder LJ, Brown NR, Gamblin SJ, Skehel JJ, Rosenthal PB
PNAS (2022) 119 pp. e2208011119-e2208011119 [ DOI: doi:10.1073/pnas.2208011119 Pubmed: 35939703 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- X-31 hemagglutinin precursor (ha0) (Complex from Influenza A virus (A/Aichi/2/1968(H3N2)))
- Octyl beta-d-glucopyranoside (292 Da, Ligand)
- Hemagglutinin,fibritin (62 kDa, Protein from Tequatrovirus T4)
Structure of Plasmodium Actin1 filament
Resolution: 2.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 6tu4
Q-score: 0.66
Vahokoski J, Calder LJ, Lopez AJ, Molloy JE, Kursula I, Rosenthal PB
PLoS Pathog (2022) 18 pp. e1010408-e1010408 [ Pubmed: 35377914 DOI: doi:10.1371/journal.ppat.1010408 ]
- Pfact1 filament (Complex from Plasmodium falciparum 3D7)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Actin-1 (42 kDa, Protein from Plasmodium falciparum 3D7)
- Jasplakinolide (709 Da, Ligand)
Structure of PfMyoA decorated Plasmodium Act1 filament
Resolution: 3.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 6tu7
Q-score: 0.55
Vahokoski J, Calder LJ, Lopez AJ, Molloy JE, Kursula I, Rosenthal PB
PLoS Pathog (2022) 18 pp. e1010408-e1010408 [ Pubmed: 35377914 DOI: doi:10.1371/journal.ppat.1010408 ]
- Magnesium ion (24 Da, Ligand)
- Pfmyoa decorated pfact1 filament (Complex from Plasmodium falciparum 3D7)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Actin-1 (42 kDa, Protein from Plasmodium falciparum 3D7)
- Myosin-a (92 kDa, Protein from Plasmodium falciparum 3D7)
- Jasplakinolide (709 Da, Ligand)