Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8tcf
Q-score: 0.493
Roy A, Shi L, Chang A, Dong X, Fernandez A, Kraft JC, Li J, Le VQ, Winegar RV, Cherf GM, Slocum D, Poulson PD, Casper GE, Vallecillo-Zuniga ML, Valdoz JC, Miranda MC, Bai H, Kipnis Y, Olshefsky A, Priya T, Carter L, Ravichandran R, Chow CM, Johnson MR, Cheng S, Smith M, Overed-Sayer C, Finch DK, Lowe D, Bera AK, Matute-Bello G, Birkland TP, DiMaio F, Raghu G, Cochran JR, Stewart LJ, Campbell MG, Van Ry PM, Springer T, Baker D
Nat Commun (2023) 14 pp. 5660-5660 [ DOI: doi:10.1038/s41467-023-41272-z Pubmed: 37704610 ]
- Integrin beta-8 (40 kDa, Protein from Homo sapiens)
- Ternary complex of integrin heterodimer (alpha-v beta-8) and the de novo minibinder protein b8_bp_dslf (Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Integrin alpha-v heavy chain (48 kDa, Protein from Homo sapiens)
- Minibinder b8_bp_dslf (8 kDa, Protein from synthetic construct)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8tcg
Q-score: 0.422
Roy A, Shi L, Chang A, Dong X, Fernandez A, Kraft JC, Li J, Le VQ, Winegar RV, Cherf GM, Slocum D, Poulson PD, Casper GE, Vallecillo-Zuniga ML, Valdoz JC, Miranda MC, Bai H, Kipnis Y, Olshefsky A, Priya T, Carter L, Ravichandran R, Chow CM, Johnson MR, Cheng S, Smith M, Overed-Sayer C, Finch DK, Lowe D, Bera AK, Matute-Bello G, Birkland TP, DiMaio F, Raghu G, Cochran JR, Stewart LJ, Campbell MG, Van Ry PM, Springer T, Baker D
Nat Commun (2023) 14 pp. 5660-5660 [ DOI: doi:10.1038/s41467-023-41272-z Pubmed: 37704610 ]
- Manganese (ii) ion (54 Da, Ligand)
- Integrin beta-6 (26 kDa, Protein from Homo sapiens)
- Ternary complex of integrin heterodimer (alpha-v beta-6) and the de novo minibinder protein b6_bp_dslf (Complex from Homo sapiens)
- Integrin alpha-v heavy chain (47 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Minibinder b6_bp_dslf (8 kDa, Protein from synthetic construct)
C6HR1_8r: Extendable repeat protein heptamer
Bethel NP, Borst AJ, Parmeggiani F, Bick MJ, Brunette TJ, Nguyen H, Kang A, Bera AK, Carter L, Miranda MC, Kibler RD, Lamb M, Li X, Sankaran B, Baker D
Nat Chem (2023) 15 pp. 1664-1671 [ DOI: doi:10.1038/s41557-023-01314-x Pubmed: 37667012 ]
- C6hr1_8r (302 kDa, Complex from unidentified)
- C6hr1_8r (Protein from unidentified)
C3HR3_8r: Extendable repeat protein trimer
Bethel NP, Borst AJ, Parmeggiani F, Bick MJ, Brunette TJ, Nguyen H, Kang A, Bera AK, Carter L, Miranda MC, Kibler RD, Lamb M, Li X, Sankaran B, Baker D
Nat Chem (2023) 15 pp. 1664-1671 [ DOI: doi:10.1038/s41557-023-01314-x Pubmed: 37667012 ]
- C3hr3_8r (141 kDa, Complex from unidentified)
- C3hr3_8r (Protein from unidentified)
C6HR1_4r: Extendable repeat protein hexamer
Bethel NP, Borst AJ, Parmeggiani F, Bick MJ, Brunette TJ, Nguyen H, Kang A, Bera AK, Carter L, Miranda MC, Kibler RD, Lamb M, Li X, Sankaran B, Baker D
Nat Chem (2023) 15 pp. 1664-1671 [ DOI: doi:10.1038/s41557-023-01314-x Pubmed: 37667012 ]
- C6hr1_4r (145 kDa, Complex from unidentified)
- C6hr1_4r (Protein from unidentified)
C4HR1_8r_shift5: Extendable repeat protein fiber
Bethel NP, Borst AJ, Parmeggiani F, Bick MJ, Brunette TJ, Nguyen H, Kang A, Bera AK, Carter L, Miranda MC, Kibler RD, Lamb M, Li X, Sankaran B, Baker D
Nat Chem (2023) 15 pp. 1664-1671 [ DOI: doi:10.1038/s41557-023-01314-x Pubmed: 37667012 ]
- C4hr1_8r_shift5 (42 kDa, Complex from unidentified)
- C4hr1_8r_shift5 (Protein from unidentified)
C3HR3_9r_shift4: Extendable repeat protein fiber
Resolution: 3.92 Å
EM Method: Helical reconstruction
Fitted PDBs: 8g8i
Q-score: 0.435
Bethel NP, Borst AJ, Parmeggiani F, Bick MJ, Brunette TJ, Nguyen H, Kang A, Bera AK, Carter L, Miranda MC, Kibler RD, Lamb M, Li X, Sankaran B, Baker D
Nat Chem (2023) 15 pp. 1664-1671 [ DOI: doi:10.1038/s41557-023-01314-x Pubmed: 37667012 ]
- C3hr3_9r_shift4 (55 kDa, Protein from synthetic construct)
- C3hr3_8r (141 kDa, Complex from unidentified)
C4HR1_4r: Extendable repeat protein tetramer
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 8ga9
Q-score: 0.404
Bethel NP, Borst AJ, Parmeggiani F, Bick MJ, Brunette TJ, Nguyen H, Kang A, Bera AK, Carter L, Miranda MC, Kibler RD, Lamb M, Li X, Sankaran B, Baker D
Nat Chem (2023) 15 pp. 1664-1671 [ DOI: doi:10.1038/s41557-023-01314-x Pubmed: 37667012 ]
- C4hr1_4r (88 kDa, Complex from synthetic construct)
- C4hr1_4r (20 kDa, Protein from synthetic construct)
C5HR2_4r: Extendable repeat protein pentamer
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 8gaq
Q-score: 0.416
Bethel NP, Borst AJ, Parmeggiani F, Bick MJ, Brunette TJ, Nguyen H, Kang A, Bera AK, Carter L, Miranda MC, Kibler RD, Lamb M, Li X, Sankaran B, Baker D
Nat Chem (2023) 15 pp. 1664-1671 [ DOI: doi:10.1038/s41557-023-01314-x Pubmed: 37667012 ]
- C5hr2_4r (92 kDa, Complex from synthetic construct)
- C5hr2_4r (18 kDa, Protein from synthetic construct)
Wang JYJ, Khmelinskaia A, Sheffler W, Miranda MC, Antanasijevic A, Borst AJ, Torres SV, Shu C, Hsia Y, Nattermann U, Ellis D, Walkey C, Ahlrichs M, Chan S, Kang A, Nguyen H, Sydeman C, Sankaran B, Wu M, Bera AK, Carter L, Fiala B, Murphy M, Baker D, Ward AB, King NP
PNAS (2023) 120 pp. e2214556120-e2214556120 [ Pubmed: 36888664 DOI: doi:10.1073/pnas.2214556120 ]