Photosynthetic assembly of Chlorobaculum tepidum (RC-FMO1)
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 7uea
Q-score: 0.406
Puskar R, Du Truong C, Swain K, Chowdhury S, Chan KY, Li S, Cheng KW, Wang TY, Poh YP, Mazor Y, Liu H, Chou TF, Nannenga BL, Chiu PL
Nat Commun (2022) 13 pp. 5824-5824 [ Pubmed: 36192412 DOI: doi:10.1038/s41467-022-33505-4 ]
- Cytochrome c (22 kDa, Protein from Chlorobaculum tepidum TLS)
- Photosynthetic assembly (rc-fmo1) (370 kDa, Complex from Chlorobaculum tepidum TLS)
- Photosystem p840 reaction center, large subunit (81 kDa, Protein from Chlorobaculum tepidum TLS)
- P840 reaction center 17 kda protein (16 kDa, Protein from Chlorobaculum tepidum TLS)
- Chlorophyll a ester (891 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Bacteriochlorophyll a (911 Da, Ligand)
- Bacteriochlorophyll a protein (40 kDa, Protein from Chlorobaculum tepidum TLS)
- 2-[(1e,3e,5e,7e,9e,11e,13e,15e,17e,19e)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl-benzene (532 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- [(2r,3s,4s,5r,6r)-6-[(10e,12e,14e)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate (895 Da, Ligand)
- Bacteriochlorophyll a isomer (911 Da, Ligand)
- Photosystem p840 reaction center iron-sulfur protein (23 kDa, Protein from Chlorobaculum tepidum TLS)
Photosynthetic assembly of Chlorobaculum tepidum (RC-FMO2)
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 7ueb
Q-score: 0.497
Puskar R, Du Truong C, Swain K, Chowdhury S, Chan KY, Li S, Cheng KW, Wang TY, Poh YP, Mazor Y, Liu H, Chou TF, Nannenga BL, Chiu PL
Nat Commun (2022) 13 pp. 5824-5824 [ Pubmed: 36192412 DOI: doi:10.1038/s41467-022-33505-4 ]
- Pscf (6 kDa, Protein from Chlorobaculum tepidum TLS)
- Cytochrome c (22 kDa, Protein from Chlorobaculum tepidum TLS)
- Photosystem p840 reaction center, large subunit (81 kDa, Protein from Chlorobaculum tepidum TLS)
- P840 reaction center 17 kda protein (16 kDa, Protein from Chlorobaculum tepidum TLS)
- Chlorophyll a ester (891 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Bacteriochlorophyll a (911 Da, Ligand)
- Bacteriochlorophyll a protein (40 kDa, Protein from Chlorobaculum tepidum TLS)
- 2-[(1e,3e,5e,7e,9e,11e,13e,15e,17e,19e)-3,7,12,16,20,24-hexamethylpentacosa-1,3,5,7,9,11,13,15,17,19,23-undecaenyl]-1,3,4-trimethyl-benzene (532 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psce (6 kDa, Protein from Chlorobaculum tepidum TLS)
- [(2r,3s,4s,5r,6r)-6-[(10e,12e,14e)-2,6,10,14,19,23-hexamethyl-25-(2,3,6-trimethylphenyl)pentacosa-6,8,10,12,14,16,18,20,22,24-decaen-2-yl]oxy-3,4,5-tris(oxidanyl)oxan-2-yl]methyl dodecanoate (895 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosynthetic assembly (rc-fmo2) (504 kDa, Complex from Chlorobaculum tepidum TLS)
- Bacteriochlorophyll a isomer (911 Da, Ligand)
- Photosystem p840 reaction center iron-sulfur protein (23 kDa, Protein from Chlorobaculum tepidum TLS)
Structure of yeast DNA Polymerase Zeta (apo)
Resolution: 4.11 Å
EM Method: Single-particle
Fitted PDBs: 7lxd
Q-score: 0.23
Du Truong C, Craig TA, Cui G, Botuyan MV, Serkasevich RA, Chan KY, Mer G, Chiu PL, Kumar R
J Biol Chem (2021) 297 pp. 100912-100912 [ Pubmed: 34174285 DOI: doi:10.1016/j.jbc.2021.100912 ]
- Dna polymerase zeta (172 MDa, Complex from Saccharomyces cerevisiae S288C)
- Dna polymerase delta subunit 3 (40 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Iron/sulfur cluster (351 Da, Ligand)
- Dna polymerase delta small subunit (55 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna polymerase zeta catalytic subunit (173 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna polymerase zeta processivity subunit (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Cryo-EM map of Trigger Factor bound to a translating ribosome
Deeng J, Chan KY, van der Sluis E, Bischoff L, Berninghausen O, Han W, Gumbart J, Schulten K, Beatrix B, Beckmann R
J Mol Biol (2016) 428 pp. 3588-3602 [ Pubmed: 27320387 DOI: doi:10.1016/j.jmb.2016.06.007 ]
Cryo-EM map of Trigger Factor bound to a translating ribosome
Resolution: 7.7 Å
EM Method: Single-particle
Fitted PDBs: 4urd
Q-score: 0.042
Deeng J, Chan KY, van der Sluis E, Bischoff L, Berninghausen O, Han W, Gumbart J, Schulten K, Beatrix B, Beckmann R
J Mol Biol (2016) 428 pp. 3588-3602 [ Pubmed: 27320387 DOI: doi:10.1016/j.jmb.2016.06.007 ]
- Cytosolic 70s ribosome (Complex from Escherichia coli)
- Trigger factor (48 kDa, Protein from Escherichia coli)
- Tnac-stalled-rnc with trigger factor (Sample)
Cryo-EM map of Trigger Factor bound to a translating ribosome
Deeng J, Chan KY, van der Sluis E, Bischoff L, Berninghausen O, Han W, Gumbart J, Schulten K, Beatrix B, Beckmann R
J Mol Biol (2016) 428 pp. 3588-3602 [ Pubmed: 27320387 DOI: doi:10.1016/j.jmb.2016.06.007 ]
8-fold symmetric rATcpn-alpha in apo state
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 3j1b
Q-score: 0.196
Zhang K, Wang L, Liu Y, Chan KY, Pang X, Schulten K, Dong Z, Sun F
Protein Cell (2013) 4 pp. 432-444 [ Pubmed: 23709365 DOI: doi:10.1007/s13238-013-3026-9 ]
- Ratcpn-alpha in apo state (960 kDa, Sample)
- Group ii chaperonin alpha (960 kDa, Protein from Acidianus tengchongensis)
9-fold symmetric rATcpn-alpha in apo state
Resolution: 9.1 Å
EM Method: Single-particle
Fitted PDBs: 3j1c
Q-score: 0.093
Zhang K, Wang L, Liu Y, Chan KY, Pang X, Schulten K, Dong Z, Sun F
Protein Cell (2013) 4 pp. 432-444 [ Pubmed: 23709365 DOI: doi:10.1007/s13238-013-3026-9 ]
- Group ii chaperonin alpha (1 MDa, Protein from Acidianus tengchongensis)
- Ratcpn-alpha in apo state (1 MDa, Sample)
9-fold symmetric rATcpn-beta in apo state
Resolution: 8.3 Å
EM Method: Single-particle
Fitted PDBs: 3j1e
Q-score: 0.113
Zhang K, Wang L, Liu Y, Chan KY, Pang X, Schulten K, Dong Z, Sun F
Protein Cell (2013) 4 pp. 432-444 [ Pubmed: 23709365 DOI: doi:10.1007/s13238-013-3026-9 ]
- Ratcpn-beta in apo state (1 MDa, Sample)
- Group ii chaperonin beta (1 MDa, Protein from Acidianus tengchongensis)
9-fold symmetric rATcpn-beta in ATP-binding state
Resolution: 6.2 Å
EM Method: Single-particle
Fitted PDBs: 3j1f
Q-score: 0.141
Zhang K, Wang L, Liu Y, Chan KY, Pang X, Schulten K, Dong Z, Sun F
Protein Cell (2013) 4 pp. 432-444 [ Pubmed: 23709365 DOI: doi:10.1007/s13238-013-3026-9 ]
- Ratcpn-beta in atp-binding state (1 MDa, Sample)
- Group ii chaperonin beta (1 MDa, Protein from Acidianus tengchongensis)