SARS-CoV-2 Omicron spike in complex with 5817 Fab
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8khc
Q-score: 0.351
Wang Y, Zhang Z, Yang M, Xiong X, Yan Q, Cao L, Wei P, Zhang Y, Zhang L, Lv K, Chen J, Liu X, Zhao X, Xiao J, Zhang S, Zhu A, Gan M, Zhang J, Cai R, Zhuo J, Zhang Y, Rao H, Qu B, Zhang Y, Chen L, Dai J, Cheng L, Hu Q, Chen Y, Lv H, So RTY, Peiris M, Zhao J, Liu X, Mok CKP, Wang X, Zhao J
Cell Rep (2024) 43 pp. 113653-113653 [ DOI: doi:10.1016/j.celrep.2023.113653 Pubmed: 38175758 ]
- Light chain of 5817 fab (11 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 omicron spike in complex with 5817 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of 5817 fab (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
The interface structure of Omicron RBD binding to 5817 Fab
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8khd
Q-score: 0.393
Wang Y, Zhang Z, Yang M, Xiong X, Yan Q, Cao L, Wei P, Zhang Y, Zhang L, Lv K, Chen J, Liu X, Zhao X, Xiao J, Zhang S, Zhu A, Gan M, Zhang J, Cai R, Zhuo J, Zhang Y, Rao H, Qu B, Zhang Y, Chen L, Dai J, Cheng L, Hu Q, Chen Y, Lv H, So RTY, Peiris M, Zhao J, Liu X, Mok CKP, Wang X, Zhao J
Cell Rep (2024) 43 pp. 113653-113653 [ DOI: doi:10.1016/j.celrep.2023.113653 Pubmed: 38175758 ]
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Heavy chain of 5817 (13 kDa, Protein from Homo sapiens)
- The interface structure of omicron rbd binding to 5817 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Light chain of 5817 (11 kDa, Protein from Homo sapiens)
Chlamydomonas reinhardtii mastigoneme (constituent map 1)
Dai J, Ma M, Niu Q, Eisert RJ, Wang X, Das P, Lechtreck KF, Dutcher SK, Zhang R, Brown A
Cell (2024) 187 pp. 1907-1921.e16 [ Pubmed: 38552624 DOI: doi:10.1016/j.cell.2024.03.005 ]
Chlamydomonas reinhardtii mastigoneme (constituent map 2)
Dai J, Ma M, Niu Q, Eisert RJ, Wang X, Das P, Lechtreck KF, Dutcher SK, Zhang R, Brown A
Cell (2024) 187 pp. 1907-1921.e16 [ Pubmed: 38552624 DOI: doi:10.1016/j.cell.2024.03.005 ]
Chlamydomonas reinhardtii mastigoneme (constituent map 3)
Dai J, Ma M, Niu Q, Eisert RJ, Wang X, Das P, Lechtreck KF, Dutcher SK, Zhang R, Brown A
Cell (2024) 187 pp. 1907-1921.e16 [ Pubmed: 38552624 DOI: doi:10.1016/j.cell.2024.03.005 ]
Composite cryo-EM map of the Chlamydomonas reinhardtii mastigoneme
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9b4h
Q-score: 0.488
Dai J, Ma M, Niu Q, Eisert RJ, Wang X, Das P, Lechtreck KF, Dutcher SK, Zhang R, Brown A
Cell (2024) 187 pp. 1907-1921.e16 [ Pubmed: 38552624 DOI: doi:10.1016/j.cell.2024.03.005 ]
Cryo-EM Structure of SARS-CoV-2 BA.2 Spike protein in complex with BA7535
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 8h7l
Q-score: 0.377
Wang Y, Yan A, Song D, Duan M, Dong C, Chen J, Jiang Z, Gao Y, Rao M, Feng J, Zhang Z, Qi R, Ma X, Liu H, Yu B, Wang Q, Zong M, Jiao J, Xing P, Pan R, Li D, Xiao J, Sun J, Li Y, Zhang L, Shen Z, Sun B, Zhao Y, Zhang L, Dai J, Zhao J, Wang L, Dou C, Liu Z, Zhao J
Nat Commun (2024) 15 pp. 842-842 [ DOI: doi:10.1038/s41467-024-45050-3 Pubmed: 38287016 ]
- Sars-cov-2 ba.2 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Ba7535 fab light chain (23 kDa, Protein from Homo sapiens)
- Ba7535 (Complex from Homo sapiens)
- Cryo-em structure of sars-cov-2 ba.2 spike protein in complex with ba7535 (Complex)
- Ba7535 fab heavt chain (49 kDa, Protein from Homo sapiens)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of SARS-CoV-2 BA.2 RBD in complex with BA7535 fab (local refinement)
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8h7z
Q-score: 0.461
Wang Y, Yan A, Song D, Duan M, Dong C, Chen J, Jiang Z, Gao Y, Rao M, Feng J, Zhang Z, Qi R, Ma X, Liu H, Yu B, Wang Q, Zong M, Jiao J, Xing P, Pan R, Li D, Xiao J, Sun J, Li Y, Zhang L, Shen Z, Sun B, Zhao Y, Zhang L, Dai J, Zhao J, Wang L, Dou C, Liu Z, Zhao J
Nat Commun (2024) 15 pp. 842-842 [ DOI: doi:10.1038/s41467-024-45050-3 Pubmed: 38287016 ]
- Spike glycoprotein (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ba7535 fab (49 kDa, Protein from Homo sapiens)
- Cryo-em structure of sars-cov-2 ba.2 rbd in complex with ba7535 fab (local refinement) (Complex from Severe acute respiratory syndrome coronavirus 2)
- Ba7535 fab (23 kDa, Protein from Homo sapiens)
Structure of Leishmania tarentolae IFT-A (state 1)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8f5o
Q-score: 0.335
Meleppattu S, Zhou H, Dai J, Gui M, Brown A
Cell (2022) 185 pp. 4986- [ Pubmed: 36563665 DOI: doi:10.1016/j.cell.2022.11.033 ]
- Tpr_region domain-containing protein (180 kDa, Protein from Leishmania tarentolae)
- Wd_repeats_region domain-containing protein (182 kDa, Protein from Leishmania tarentolae)
- Net domain-containing protein (38 kDa, Protein from Leishmania tarentolae)
- Intraflagellar transport protein 122b, putative (139 kDa, Protein from Leishmania tarentolae)
- Ift-a (Complex from Leishmania tarentolae)
- Wd_repeats_region domain-containing protein (152 kDa, Protein from Leishmania tarentolae)
- Zinc ion (65 Da, Ligand)
- Intraflagellar transport protein 122 homolog (144 kDa, Protein from Leishmania tarentolae)
Structure of Leishmania tarentolae IFT-A (state 2)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8f5p
Q-score: 0.386
Meleppattu S, Zhou H, Dai J, Gui M, Brown A
Cell (2022) 185 pp. 4986- [ Pubmed: 36563665 DOI: doi:10.1016/j.cell.2022.11.033 ]
- Tpr_region domain-containing protein (180 kDa, Protein from Leishmania tarentolae)
- Net domain-containing protein (38 kDa, Protein from Leishmania tarentolae)
- Intraflagellar transport protein 122b, putative (139 kDa, Protein from Leishmania tarentolae)
- Wd_repeats_region domain-containing protein (182 kDa, Protein from Leishmania tarentolae)
- Ift-a (Complex from Leishmania tarentolae)
- Wd_repeats_region domain-containing protein (152 kDa, Protein from Leishmania tarentolae)
- Zinc ion (65 Da, Ligand)
- Intraflagellar transport protein 122 homolog (144 kDa, Protein from Leishmania tarentolae)