cryo-EM structure of human H2A.Z.2.2 nucleosome
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6m4d
Q-score: 0.311
Zhou M, Dai L, Li C, Shi L, Huang Y, Guo Z, Wu F, Zhu P, Zhou Z
EMBO J (2021) 40 pp. e105907-e105907 [ Pubmed: 33073403 DOI: doi:10.15252/embj.2020105907 ]
- H2a.z.2.2 nucleosome (Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (125-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2b type 2-e (13 kDa, Protein from Homo sapiens)
- Dna (125-mer) (45 kDa, DNA from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2a.v (12 kDa, Protein from Homo sapiens)
cryo-EM structure of human H2A.B nucleosome
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6m4g
Q-score: 0.493
Zhou M, Dai L, Li C, Shi L, Huang Y, Guo Z, Wu F, Zhu P, Zhou Z
EMBO J (2021) 40 pp. e105907-e105907 [ Pubmed: 33073403 DOI: doi:10.15252/embj.2020105907 ]
- Dna (93-mer) (45 kDa, DNA from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 2-e (13 kDa, Protein from Homo sapiens)
- H2a.b nucleosome (Complex from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2a-bbd type 2/3 (12 kDa, Protein from Homo sapiens)
- Dna (93-mer) (45 kDa, DNA from Homo sapiens)
Structural mechanism of nucleosome dynamics governed by histone H2A variants H2A.B or H2A.Z.2.2
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6m4h
Q-score: 0.365
Zhou M, Dai L, Li C, Shi L, Huang Y, Guo Z, Wu F, Zhu P, Zhou Z
EMBO J (2021) 40 pp. e105907-e105907 [ Pubmed: 33073403 DOI: doi:10.15252/embj.2020105907 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (103-mer) (45 kDa, DNA from Homo sapiens)
- Histone h2b type 2-e (13 kDa, Protein from Homo sapiens)
- Dna (103-mer) (45 kDa, DNA from Homo sapiens)
- H2a.b nucleosome (Complex from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h2a-bbd type 2/3 (12 kDa, Protein from Homo sapiens)
Cryo-EM structure of Echovirus 6 complexed with its attachment receptor CD55 at PH 5.5
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6ilj
Q-score: 0.51
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ DOI: doi:10.1016/j.cell.2019.04.035 Pubmed: 31104841 ]
- Complement decay-accelerating factor (21 kDa, Protein from Homo sapiens)
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Cryo-em structure of echovirus 6 complexed with its attachment receptor cd55 at ph 5.5 (Complex from Echovirus E6)
- Capsid protein vp1 (31 kDa, Protein from Echovirus E6)
- Sphingosine (299 Da, Ligand)
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)
Cryo-EM structure of Echovirus 6 complexed with its attachment receptor CD55 at PH 7.4
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6ilk
Q-score: 0.586
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ DOI: doi:10.1016/j.cell.2019.04.035 Pubmed: 31104841 ]
- Cryo-em structure of echovirus 6 complexed with its attachment receptor cd55 at ph 7.4 (Complex from Echovirus E6)
- Complement decay-accelerating factor (21 kDa, Protein from Homo sapiens)
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Capsid protein vp1 (31 kDa, Protein from Echovirus E6)
- Sphingosine (299 Da, Ligand)
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)
Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 5.5
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6ill
Q-score: 0.444
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ DOI: doi:10.1016/j.cell.2019.04.035 Pubmed: 31104841 ]
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Capsid protein vp1 (31 kDa, Protein from Echovirus E6)
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Cryo-em structure of echovirus 6 complexed with its uncoating receptor fcrn at ph 5.5 (Complex from Echovirus E6)
Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 7.4
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6ilm
Q-score: 0.456
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ DOI: doi:10.1016/j.cell.2019.04.035 Pubmed: 31104841 ]
- Igg receptor fcrn large subunit p51 (29 kDa, Protein from Homo sapiens)
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Capsid protein vp1 (32 kDa, Protein from Echovirus E6)
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Beta-2-microglobulin (11 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Cryo-em structure of echovirus 6 complexed with its uncoating receptor fcrn at ph 7.4 (Complex from Echovirus E6)
- Sphingosine (299 Da, Ligand)
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)
Cryo-EM structure of full Echovirus 6 particle at PH 5.5
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6iln
Q-score: 0.541
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ DOI: doi:10.1016/j.cell.2019.04.035 Pubmed: 31104841 ]
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)
- Capsid protein vp1 (31 kDa, Protein from Echovirus E6)
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Echovirus e6 (Virus from Echovirus E6)
- Sphingosine (299 Da, Ligand)
Cryo-EM structure of empty Echovirus 6 particle at PH 7.4
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6ilo
Q-score: 0.552
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ DOI: doi:10.1016/j.cell.2019.04.035 Pubmed: 31104841 ]
- Capsid protein vp1 (26 kDa, Protein from Echovirus E6)
- Capsid protein vp3 (25 kDa, Protein from Echovirus E6)
- Echovirus e6 (Virus from Echovirus E6)
- Capsid protein vp2 (27 kDa, Protein from Echovirus E6)
Cryo-EM structure of full Echovirus 6 particle at PH 7.4
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6ilp
Q-score: 0.606
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ DOI: doi:10.1016/j.cell.2019.04.035 Pubmed: 31104841 ]
- Capsid protein vp1 (31 kDa, Protein from Echovirus E6)
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)
- Echovirus e6 (Virus from Echovirus E6)
- Sphingosine (299 Da, Ligand)