Tetrahymena ribozyme with water and magnesium ions
Resolution: 2.31 Å
EM Method: Single-particle
Fitted PDBs: 9cbw, 9cby
Q-score: 0.5455
Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Chiu W
To Be Published
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Apo l-21 scai tetrahymena ribozyme with water and metal ions. (125 kDa, Complex from Tetrahymena thermophila)
- Rna (387-mer) (125 kDa, RNA from Tetrahymena thermophila)
Tetrahymena ribozyme with water and magnesium ions
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9cbu, 9cbx
Q-score: 0.5565
Kretsch RC, Li S, Pintilie G, Palo MZ, Case DA, Das R, Chiu W
To Be Published
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Apo l-21 scai tetrahymena ribozyme with water and metal ions. (125 kDa, Complex from Tetrahymena thermophila)
- Rna (387-mer) (125 kDa, RNA from Tetrahymena thermophila)
SD1-2 fab in complex with SARS-COV-2 BA.12.1 Spike Glycoprotein.
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8r1c
Q-score: 0.645
Zhou D, Supasa P, Liu C, Dijokaite-Guraliuc A, Duyvesteyn HME, Selvaraj M, Mentzer AJ, Das R, Dejnirattisai W, Temperton N, Klenerman P, Dunachie SJ, Fry EE, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Nat Commun (2024) 15 pp. 2734-2734 [ Pubmed: 38548763 DOI: doi:10.1038/s41467-024-46982-6 ]
- Sd1-2 fab light chain (11 kDa, Protein from Homo sapiens)
- Sd1-2 fab in complex with sars-cov-2 ba.2.12.1 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sd1-2 fab heavy chain (13 kDa, Protein from Homo sapiens)
- Ba.2.12.1 spike glycoprotein ectodomain (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sd1-2 fab (Complex from Homo sapiens)
SD1-3 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 8r1d
Q-score: 0.658
Zhou D, Supasa P, Liu C, Dijokaite-Guraliuc A, Duyvesteyn HME, Selvaraj M, Mentzer AJ, Das R, Dejnirattisai W, Temperton N, Klenerman P, Dunachie SJ, Fry EE, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Nat Commun (2024) 15 pp. 2734-2734 [ Pubmed: 38548763 DOI: doi:10.1038/s41467-024-46982-6 ]
- Water (18 Da, Ligand)
- Ba.2.12.1 spike glycoprotein ectodomain (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sd1-3 fab heavy chain (12 kDa, Protein from Homo sapiens)
- Sd1-3 fab light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein,fibritin (142 kDa, Protein from Enterobacteria phage T4)
- Sd1-3 fab (Complex from Homo sapiens)
- Sd1-3 fab in complex with sars-cov-2 ba.12.1 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
BA.4/5-5 FAB IN COMPLEX WITH SARS-COV-2 BA.4 SPIKE GLYCOPROTEIN
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8cin
Q-score: 0.514
Zhou D, Supasa P, Liu C, Dijokaite-Guraliuc A, Duyvesteyn HME, Selvaraj M, Mentzer AJ, Das R, Dejnirattisai W, Temperton N, Klenerman P, Dunachie SJ, Fry EE, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Nat Commun (2024) 15 pp. 2734-2734 [ Pubmed: 38548763 DOI: doi:10.1038/s41467-024-46982-6 ]
- Ba.4/5-5 fab heavy and light chains. (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-coronavirus-2 ba.4 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Ba.4/5-5 fab light chain (22 kDa, Protein from Homo sapiens)
- Sars-coronavirus-2 ba.4 spike glycoprotein in complex with ba.4/5-5 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Ba.4/5-5 fab heavy chain (23 kDa, Protein from Homo sapiens)
SARS-CoV-1 5' proximal stem-loop 5
Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R
PNAS (2024) 121 pp. e2320493121-e2320493121 [ Pubmed: 38427602 DOI: doi:10.1073/pnas.2320493121 ]
- Sars-cov-1 5' proximal stem-loop 5 (46 kDa, Complex)
- Sars-cov-1 5' proximal stem-loop 5 (45 kDa, RNA from SARS coronavirus Tor2)
BtCoV-HKU5 5' proximal stem-loop 5, conformation 1
Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R
PNAS (2024) 121 pp. e2320493121-e2320493121 [ Pubmed: 38427602 DOI: doi:10.1073/pnas.2320493121 ]
BtCoV-HKU5 5' proximal stem-loop 5, conformation 2
Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R
PNAS (2024) 121 pp. e2320493121-e2320493121 [ Pubmed: 38427602 DOI: doi:10.1073/pnas.2320493121 ]
- Rna (135-mer) (43 kDa, RNA from Pipistrellus bat coronavirus HKU5)
- Btcov-hku5 5' proximal stem-loop 5, conformation 2 (43 kDa, Complex from Pipistrellus bat coronavirus HKU5)
BtCoV-HKU5 5' proximal stem-loop 5, conformation 4
Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R
PNAS (2024) 121 pp. e2320493121-e2320493121 [ Pubmed: 38427602 DOI: doi:10.1073/pnas.2320493121 ]
MERS 5' proximal stem-loop 5, conformation 1
Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R
PNAS (2024) 121 pp. e2320493121-e2320493121 [ Pubmed: 38427602 DOI: doi:10.1073/pnas.2320493121 ]