Lipidic amyloid-beta(1-40) fibril - polymorph L1
Resolution: 2.88 Å
EM Method: Helical reconstruction
Fitted PDBs: 8ovk
Q-score: 0.57
Frieg B, Han M, Giller K, Dienemann C, Riedel D, Becker S, Andreas LB, Griesinger C, Schroder GF
Nat Commun (2024) 15 pp. 1297-1297 [ DOI: doi:10.1038/s41467-023-43822-x Pubmed: 38351005 ]
Lipidic amyloid-beta(1-40) fibril - polymorph L2
Resolution: 3.24 Å
EM Method: Helical reconstruction
Fitted PDBs: 8ovm
Q-score: 0.503
Frieg B, Han M, Giller K, Dienemann C, Riedel D, Becker S, Andreas LB, Griesinger C, Schroder GF
Nat Commun (2024) 15 pp. 1297-1297 [ DOI: doi:10.1038/s41467-023-43822-x Pubmed: 38351005 ]
Lipidic amyloid-beta(1-40) fibril - polymorph L3
Resolution: 3.28 Å
EM Method: Helical reconstruction
Fitted PDBs: 8owd
Q-score: 0.534
Frieg B, Han M, Giller K, Dienemann C, Riedel D, Becker S, Andreas LB, Griesinger C, Schroder GF
Nat Commun (2024) 15 pp. 1297-1297 [ DOI: doi:10.1038/s41467-023-43822-x Pubmed: 38351005 ]
Lipidic amyloid-beta(1-40) fibril - polymorph L2-L3
Resolution: 3.75 Å
EM Method: Helical reconstruction
Fitted PDBs: 8owe
Q-score: 0.429
Frieg B, Han M, Giller K, Dienemann C, Riedel D, Becker S, Andreas LB, Griesinger C, Schroder GF
Nat Commun (2024) 15 pp. 1297-1297 [ DOI: doi:10.1038/s41467-023-43822-x Pubmed: 38351005 ]
Lipidic amyloid-beta(1-40) fibril - polymorph L2-L2
Resolution: 3.75 Å
EM Method: Helical reconstruction
Fitted PDBs: 8owj
Q-score: 0.392
Frieg B, Han M, Giller K, Dienemann C, Riedel D, Becker S, Andreas LB, Griesinger C, Schroder GF
Nat Commun (2024) 15 pp. 1297-1297 [ DOI: doi:10.1038/s41467-023-43822-x Pubmed: 38351005 ]
Lipidic amyloid-beta(1-40) fibril - polymorph L3-L3
Resolution: 3.86 Å
EM Method: Helical reconstruction
Fitted PDBs: 8owk
Q-score: 0.441
Frieg B, Han M, Giller K, Dienemann C, Riedel D, Becker S, Andreas LB, Griesinger C, Schroder GF
Nat Commun (2024) 15 pp. 1297-1297 [ DOI: doi:10.1038/s41467-023-43822-x Pubmed: 38351005 ]
Cryo-EM structure of the Nup98(298-327) fibril
Resolution: 2.67 Å
EM Method: Helical reconstruction
Fitted PDBs: 8ci8
Q-score: 0.609
Ibanez de Opakua A, Pantoja CF, Cima-Omori MS, Dienemann C, Zweckstetter M
Nat Commun (2024) 15 pp. 3797-3797 [ Pubmed: 38714656 DOI: doi:10.1038/s41467-024-48194-4 ]
- Nuclear pore complex protein nup98 (3 kDa, Protein from Homo sapiens)
- Nup98(298-327) (Complex from Homo sapiens)
Cryo-EM structure of a full-length HACE1 dimer
Resolution: 4.73 Å
EM Method: Single-particle
Fitted PDBs: 8pwl
Q-score: 0.221
During J, Wolter M, Toplak JJ, Torres C, Dybkov O, Fokkens TJ, Bohnsack KE, Urlaub H, Steinchen W, Dienemann C, Lorenz S
Nat Struct Mol Biol (2024) 31 pp. 364-377 [ Pubmed: 38332367 DOI: doi:10.1038/s41594-023-01203-4 ]
- E3 ubiquitin-protein ligase hace1 (102 kDa, Protein from Homo sapiens)
- Hace1 (Complex from Homo sapiens)
HACE1 in complex with RAC1 Q61L
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8q0n
Q-score: 0.277
During J, Wolter M, Toplak JJ, Torres C, Dybkov O, Fokkens TJ, Bohnsack KE, Urlaub H, Steinchen W, Dienemann C, Lorenz S
Nat Struct Mol Biol (2024) 31 pp. 364-377 [ Pubmed: 38332367 DOI: doi:10.1038/s41594-023-01203-4 ]
- Hace1 in complex with rac1 q61l (Complex from Homo sapiens)
- Ras-related c3 botulinum toxin substrate 1 (23 kDa, Protein from Homo sapiens)
- Iodoacetic acid (185 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- E3 ubiquitin-protein ligase hace1 (99 kDa, Protein from Homo sapiens)
Yeast RNA polymerase II transcription pre-initiation complex with core Mediator
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8cen
Q-score: 0.269
Schilbach S, Wang H, Dienemann C, Cramer P
PNAS (2023) 120 pp. e2220542120-e2220542120 [ Pubmed: 37014863 DOI: doi:10.1073/pnas.2220542120 ]
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 18 (34 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb4 (25 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 20 (22 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 8 (25 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 9 (17 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb11 (13 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 31 (14 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iie subunit alpha (55 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih helicase subunit xpb (95 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Transcription initiation factor iif subunit alpha (82 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iia subunit 2 (13 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb3 (38 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iib (39 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih helicase subunit xpd (89 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit tfb5 (8 kDa, Protein from Saccharomyces cerevisiae)
- Yeast rna polymerase ii transcription pre-initiation complex with core mediator (2 MDa, Complex)
- Mediator of rna polymerase ii transcription subunit 21 (16 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 4 (32 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit tfb2 (58 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 6 (32 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 7 (25 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit tfb1 (72 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase ii subunit rpb2 (138 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 1 (64 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iia large subunit (32 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factors and mediator of rna polymerase ii transcription subunits (Complex from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 11 (13 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit tfb4 (37 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 14 (84 kDa, Protein from Saccharomyces cerevisiae)
- Dna-directed rna polymerase subunits (Complex from Saccharomyces cerevisiae)
- General transcription and dna repair factor iih subunit ssl1 (52 kDa, Protein from Saccharomyces cerevisiae)
- Rna polymerase ii transcription factor b subunit 3 (38 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Transcription initiation factor iie subunit beta (37 kDa, Protein from Saccharomyces cerevisiae)
- Nontemplate dna (209-mer) (64 kDa, DNA from synthetic construct)
- Dna (Complex from Synthetic construct)
- Dna-directed rna polymerase ii subunit rpb1 (191 kDa, Protein from Saccharomyces cerevisiae)
- General transcription and dna repair factors, and rna polymerase ii transcription factor b subunit 3 (Complex from Saccharomyces cerevisiae)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 19 (24 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 22 (13 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 10 (17 kDa, Protein from Saccharomyces cerevisiae)
- Transcription initiation factor iif subunit beta (46 kDa, Protein from Saccharomyces cerevisiae)
- Mediator of rna polymerase ii transcription subunit 17 (78 kDa, Protein from Saccharomyces cerevisiae)
- Iron/sulfur cluster (351 Da, Ligand)
- Tata-binding protein (27 kDa, Protein from Saccharomyces cerevisiae)
- Template dna (209-mer) (64 kDa, DNA from synthetic construct)