Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8hag
Q-score: 0.29
Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T
Nat Commun (2023) 14 pp. 4103-4103 [ DOI: doi:10.1038/s41467-023-39735-4 Pubmed: 37460559 ]
- The p300 catalytic core bound to the h4k12ack16ac nucleosome (Complex from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone acetyltransferase p300 (92 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Dna (180-mer) (55 kDa, DNA from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8hah
Q-score: 0.159
Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T
Nat Commun (2023) 14 pp. 4103-4103 [ DOI: doi:10.1038/s41467-023-39735-4 Pubmed: 37460559 ]
- The p300 catalytic core bound to the h4k12ack16ac nucleosome (Complex from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone acetyltransferase p300 (92 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Dna (180-mer) (55 kDa, DNA from Homo sapiens)
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 8hai
Q-score: 0.212
Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T
Nat Commun (2023) 14 pp. 4103-4103 [ DOI: doi:10.1038/s41467-023-39735-4 Pubmed: 37460559 ]
- The p300 catalytic core bound to the h4k12ack16ac nucleosome (Complex from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone acetyltransferase p300 (92 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Dna (180-mer) (55 kDa, DNA from Homo sapiens)
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 8haj
Q-score: 0.2
Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T
Nat Commun (2023) 14 pp. 4103-4103 [ DOI: doi:10.1038/s41467-023-39735-4 Pubmed: 37460559 ]
- The p300 catalytic core bound to the h4k12ack16ac nucleosome (Complex from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone acetyltransferase p300 (92 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Dna (180-mer) (55 kDa, DNA from Homo sapiens)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8hak
Q-score: 0.214
Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T
Nat Commun (2023) 14 pp. 4103-4103 [ DOI: doi:10.1038/s41467-023-39735-4 Pubmed: 37460559 ]
- The p300 catalytic core bound to the h4k12ack16ac nucleosome (Complex from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone acetyltransferase p300 (92 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Dna (180-mer) (55 kDa, DNA from Homo sapiens)
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 1
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8hal
Q-score: 0.195
Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T
Nat Commun (2023) 14 pp. 4103-4103 [ DOI: doi:10.1038/s41467-023-39735-4 Pubmed: 37460559 ]
- The cbp catalytic core bound to the h4k12ack16ac nucleosome (Complex from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Dna (180-mer) (55 kDa, DNA from Homo sapiens)
- Creb-binding protein (92 kDa, Protein from Homo sapiens)
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 2
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8ham
Q-score: 0.242
Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T
Nat Commun (2023) 14 pp. 4103-4103 [ DOI: doi:10.1038/s41467-023-39735-4 Pubmed: 37460559 ]
- The cbp catalytic core bound to the h4k12ack16ac nucleosome (Complex from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Dna (180-mer) (55 kDa, DNA from Homo sapiens)
- Creb-binding protein (92 kDa, Protein from Homo sapiens)
Cryo-EM structure of the CBP catalytic core bound to the H4K12acK16ac nucleosome, class 3
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8han
Q-score: 0.209
Kikuchi M, Morita S, Wakamori M, Sato S, Uchikubo-Kamo T, Suzuki T, Dohmae N, Shirouzu M, Umehara T
Nat Commun (2023) 14 pp. 4103-4103 [ DOI: doi:10.1038/s41467-023-39735-4 Pubmed: 37460559 ]
- The cbp catalytic core bound to the h4k12ack16ac nucleosome (Complex from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone h2b type 1-j (13 kDa, Protein from Homo sapiens)
- Dna (180-mer) (55 kDa, DNA from Homo sapiens)
- Creb-binding protein (92 kDa, Protein from Homo sapiens)
Cryo-EM structure of the TnpB-omegaRNA-target DNA ternary complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8h1j
Q-score: 0.453
Nakagawa R, Hirano H, Omura SN, Nety S, Kannan S, Altae-Tran H, Yao X, Sakaguchi Y, Ohira T, Wu WY, Nakayama H, Shuto Y, Tanaka T, Sano FK, Kusakizako T, Kise Y, Itoh Y, Dohmae N, van der Oost J, Suzuki T, Zhang F, Nureki O
Nature (2023) 616 pp. 390-397 [ Pubmed: 37020030 DOI: doi:10.1038/s41586-023-05933-9 ]
- Tnpb-omegarna-target dna ternary complex (Complex from Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539)
- Non-target strand (10 kDa, DNA from Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539)
- Zinc ion (65 Da, Ligand)
- Rna-guided dna endonuclease tnpb (46 kDa, Protein from Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539)
- Target strand (10 kDa, DNA from Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539)
- Omegarna (130-mer) (79 kDa, RNA from Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539)