allo-tRNAUTu1 in the A, P, and E sites of the E. coli ribosome
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7ur5
Q-score: 0.324
Prabhakar A, Krahn N, Zhang J, Vargas-Rodriguez O, Krupkin M, Fu Z, Acosta-Reyes FJ, Ge X, Choi J, Crnkovic A, Ehrenberg M, Puglisi EV, Soll D, Puglisi J
Nucleic Acids Res (2022) 50 pp. 10201-10211 [ DOI: doi:10.1093/nar/gkac576 Pubmed: 35882385 ]
allo-tRNAUTu1A in the A site of the E. coli ribosome
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7uri
Q-score: 0.158
Prabhakar A, Krahn N, Zhang J, Vargas-Rodriguez O, Krupkin M, Fu Z, Acosta-Reyes FJ, Ge X, Choi J, Crnkovic A, Ehrenberg M, Puglisi EV, Soll D, Puglisi J
Nucleic Acids Res (2022) 50 pp. 10201-10211 [ DOI: doi:10.1093/nar/gkac576 Pubmed: 35882385 ]
- Allo-trnautu1a (28 kDa, RNA from metagenome)
- E. coli 70s ribosome with allo-trnautu1a in the a site (Complex from Escherichia coli)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6ore
Q-score: 0.516
Fu Z, Indrisiunaite G, Kaledhonkar S, Shah B, Sun M, Chen B, Grassucci RA, Ehrenberg M, Frank J
Nat Commun (2019) 10 pp. 2579-2579 [ Pubmed: 31189921 DOI: doi:10.1038/s41467-019-10608-z ]
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli )
- 30s ribosomal protein s6 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli )
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli )
- 30s ribosomal protein s2 (25 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli )
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli )
- P-trna (24 kDa, RNA from Escherichia coli)
- Fme-phe-phe (471 Da, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli )
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- Release complex 70s ribosomes (Complex from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli )
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli )
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli )
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli )
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- Rna (5'-r(p*up*up*cp*up*up*cp*up*ap*a)-3') (2 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli )
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)