Aminoacyl-tRNA-EF-Tu-GDP-kir ternary complex-bound E. coli 70S ribosome
Resolution: 6.7 Å
EM Method: Single-particle
Fitted PDBs: 4v69
Q-score: 0.186
Villa E, Sengupta J, Trabuco LG, LeBarron J, Baxter WT, Shaikh TR, Grassucci RA, Nissen P, Ehrenberg M, Schulten K, Frank J
PNAS (2009) 106 pp. 1063-1068 [ DOI: doi:10.1073/pnas.0811370106 Pubmed: 19122150 ]
- 70s ribosome from e. coli complex 70s-fmet-trna-phe-trna-ef-tu-gdp-kirromycin. (Sample)
- Fmet-trnafmet (RNA from Escherichia coli)
- 70s ribosome (Complex from Escherichia coli)
- Phe-trnaphe (RNA from Escherichia coli)
- Trna (RNA from Escherichia coli)
- Elongation factor tu (Protein from Escherichia coli)
The cryo-EM structure of a translation initiation complex from Escherichia coli.
Resolution: 13.8 Å
EM Method: Single-particle
Fitted PDBs: 1zo1, 1zo3
Q-score: 0.0435
Allen GS, Zavialov A, Gursky R, Ehrenberg M, Frank J
Cell (2005) 121 pp. 703-712 [ DOI: doi:10.1016/j.cell.2005.03.023 Pubmed: 15935757 ]
- Beta if2-gdpnp (Protein from Escherichia coli)
- If1 (Protein from Escherichia coli)
- Fmet-trna (RNA from Escherichia coli)
- If3 (Protein from Escherichia coli)
- 30s (Complex from Escherichia coli)
- 50s (Complex from Escherichia coli)
- Mrna (RNA from Escherichia coli)
- E. coli 70s, if1, if3, mrna, fmet-trna, and if2-gdpnp (Sample)
The cryo-EM structure of a translation initiation complex from Escherichia coli.
Resolution: 13.8 Å
EM Method: Single-particle
Fitted PDBs: 1zo1, 1zo3
Q-score: 0.048
Allen GS, Zavialov A, Gursky R, Ehrenberg M, Frank J
Cell (2005) 121 pp. 703-712 [ DOI: doi:10.1016/j.cell.2005.03.023 Pubmed: 15935757 ]
- Beta if2-gdpnp (Protein from Escherichia coli)
- If1 (Protein from Escherichia coli)
- Fmet-trna (RNA from Escherichia coli)
- If3 (Protein from Escherichia coli)
- Mrna (RNA from Escherichia coli)
- E. coli 70s, if1, if3, mrna, fmet-trna, and if2-gdpnp (Sample)
Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Resolution: 15.5 Å
EM Method: Single-particle
Fitted PDBs: 1zn0, 1zn1
Q-score: -0.009
Gao N, Zavialov AV, Li W, Sengupta J, Valle M, Gursky RP, Ehrenberg M, Frank J
Mol Cell (2005) 18 pp. 663-674 [ DOI: doi:10.1016/j.molcel.2005.05.005 Pubmed: 15949441 ]
- 50s.ef-g.gdpnp.rrf complex from e.coli (Sample)
- Rrf (Protein from Escherichia coli)
- 50s subunit (Complex from Escherichia coli)
- Ef-g (Protein from Escherichia coli)
Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies.
Resolution: 14.1 Å
EM Method: Single-particle
Fitted PDBs: 1zn0, 1zn1
Q-score: 0.0285
Gao N, Zavialov AV, Li W, Sengupta J, Valle M, Gursky RP, Ehrenberg M, Frank J
Mol Cell (2005) 18 pp. 663-674 [ DOI: doi:10.1016/j.molcel.2005.05.005 Pubmed: 15949441 ]
- Rrf (Protein)
- Mrna (Macromolecule)
- 70s.trna-ile.mrna.puromycin.rrf from e.coli ribosome (Sample)
- Trna-ile (RNA from Escherichia coli)
- 70s (Complex)
Locking and unlocking of ribosomal motions.
Resolution: 9.0 Å
EM Method: Single-particle
Fitted PDBs: 1qza, 1qzd, 1r2x
Q-score: 0.06566667
Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J
Nat Struct Mol Biol (2003) 10 pp. 899-906 [ DOI: doi:10.1038/nsb1003 Pubmed: 14566331 ]
- Deacylated trna (RNA from Escherichia coli)
- 70s ribosome from e. coli complex 70s-fmet-trna-phe-trna-ef-tu-gdp-kirromycin. (Sample)
- Fmet-trnafmet (RNA from Escherichia coli)
- 70s from e. coli (Complex from Escherichia coli)
- Elongation factor tu (Protein from Escherichia coli)
- Phe-trnaphe (RNA from Escherichia coli)
Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy.
Resolution: 9.0 Å
EM Method: Single-particle
Fitted PDBs: 1qzb, 1qzc, 1r2w
Q-score: 0.040333334
Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J
Nat Struct Mol Biol (2003) 10 pp. 899-906 [ DOI: doi:10.1038/nsb1003 Pubmed: 14566331 ]