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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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author:"Fan G" AND author_name:"Hryc"

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EMD-27940

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III2IV2 respiratory supercomplex from Saccharomyces cerevisiae with 4 bound UQ6

Release date: May 24, 2023
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8e7s
Q-score: 0.312

Hryc CF, Mallampalli VKPS, Bovshik EI, Azinas S, Fan G, Serysheva II, Sparagna GC, Baker ML, Mileykovskaya E, Dowhan W

Nat Commun (2023) 14 pp. 2783-2783 [ DOI: doi:10.1038/s41467-023-38441-5 Pubmed: 37188665 ]

Sample:

Cardiolipin (1 kDa, Ligand)
Cytochrome c oxidase subunit 1 (58 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome c oxidase subunit 5a, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
Iii2-iv2 mitochondrial respiratory supercomplex (Complex from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit rieske, mitochondrial (23 kDa, Protein from Saccharomyces cerevisiae)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Cytochrome c oxidase subunit 26, mitochondrial (7 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 6, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome c oxidase subunit 9, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 10, mitochondrial (8 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome c oxidase subunit 3 (30 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 1, mitochondrial (50 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 2, mitochondrial (40 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome c oxidase subunit 4, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome c1, heme protein, mitochondrial (34 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b (43 kDa, Protein from Saccharomyces cerevisiae)
5-(3,7,11,15,19,23-hexamethyl-tetracosa-2,6,10,14,18,22-hexaenyl)-2,3-dimethoxy-6-methyl-benzene-1,4-diol (592 Da, Ligand)
Cytochrome c oxidase subunit 6, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 7, mitochondrial (14 kDa, Protein from Saccharomyces cerevisiae)
Protoporphyrin ix containing fe (616 Da, Ligand)
Heme-a (852 Da, Ligand)
1,2-diacyl-sn-glycero-3-phoshocholine (734 Da, Ligand)
Cytochrome c oxidase subunit 7, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae)
(5s,11r)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate (634 Da, Ligand)
Cytochrome b-c1 complex subunit 8, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
Copper (ii) ion (63 Da, Ligand)
Cytochrome c oxidase subunit 8, mitochondrial (8 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome c oxidase subunit 2 (28 kDa, Protein from Saccharomyces cerevisiae)
Di-palmitoyl-3-sn-phosphatidylethanolamine (691 Da, Ligand)
Dinuclear copper ion (127 Da, Ligand)
Cytochrome c oxidase subunit 13, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome c oxidase subunit 12, mitochondrial (9 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 9, mitochondrial (7 kDa, Protein from Saccharomyces cerevisiae)

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EMD-28011

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III2IV respiratory supercomplex from Saccharomyces cerevisiae cardiolipin-lacking mutant

Release date: May 24, 2023
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8ec0
Q-score: 0.307

Hryc CF, Mallampalli VKPS, Bovshik EI, Azinas S, Fan G, Serysheva II, Sparagna GC, Baker ML, Mileykovskaya E, Dowhan W

Nat Commun (2023) 14 pp. 2783-2783 [ DOI: doi:10.1038/s41467-023-38441-5 Pubmed: 37188665 ]

Sample:

Iii2-iv mitochondrial respiratory supercomplex (Complex from Saccharomyces cerevisiae)
Cytochrome c oxidase subunit 1 (58 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome c oxidase subunit 5a, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit rieske, mitochondrial (23 kDa, Protein from Saccharomyces cerevisiae)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Cytochrome c oxidase subunit 26, mitochondrial (7 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 6, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome c oxidase subunit 9, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome c oxidase subunit 3 (30 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 1, mitochondrial (50 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 2, mitochondrial (40 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome c oxidase subunit 4, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome c1, heme protein, mitochondrial (34 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b (43 kDa, Protein from Saccharomyces cerevisiae)
5-(3,7,11,15,19,23-hexamethyl-tetracosa-2,6,10,14,18,22-hexaenyl)-2,3-dimethoxy-6-methyl-benzene-1,4-diol (592 Da, Ligand)
Cytochrome c oxidase subunit 6, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 7, mitochondrial (14 kDa, Protein from Saccharomyces cerevisiae)
Protoporphyrin ix containing fe (616 Da, Ligand)
Heme-a (852 Da, Ligand)
(1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
1,2-diacyl-sn-glycero-3-phoshocholine (734 Da, Ligand)
Cytochrome c oxidase subunit 7, mitochondrial (6 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 8, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
Copper (ii) ion (63 Da, Ligand)
Cytochrome c oxidase subunit 8, mitochondrial (8 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome c oxidase subunit 2 (28 kDa, Protein from Saccharomyces cerevisiae)
Di-palmitoyl-3-sn-phosphatidylethanolamine (691 Da, Ligand)
Dinuclear copper ion (127 Da, Ligand)
Cytochrome c oxidase subunit 13, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome c oxidase subunit 12, mitochondrial (9 kDa, Protein from Saccharomyces cerevisiae)
Cytochrome b-c1 complex subunit 9, mitochondrial (7 kDa, Protein from Saccharomyces cerevisiae)

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EMD-8640

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Asymmetric structure of AcrAB-TolC tripartite multi drug efflux pump

Release date: April 26, 2017
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 5o66
Q-score: 0.24

Wang Z, Fan G, Hryc CF, Blaza JN, Serysheva II, Schmid MF, Chiu W, Luisi BF, Du D

eLife (2017) 6 [ DOI: doi:10.7554/eLife.24905 Pubmed: 28355133 ]

Sample:

6-[2-(3,4-dimethoxyphenyl)ethylsulfanyl]-8-[4-(2-methoxyethyl)piperazin-1-yl]-3,3-dimethyl-1,4-dihydropyrano[3,4-c]pyridine-5-carbonitrile (526 Da, Ligand)
Outer membrane protein tolc (53 kDa, Protein from Escherichia coli (strain K12))
Multidrug efflux pump accessory protein acrz (5 kDa, Protein from Escherichia coli (strain K12))
Multidrug efflux pump subunit acra (39 kDa, Protein from Escherichia coli (strain K12))
Acrabz-tolc (Complex from Escherichia coli K12)
Multidrug efflux pump subunit acrb (113 kDa, Protein from Escherichia coli (strain K12))

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EMD-3636

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multi-drug efflux; membrane transport; RND superfamily; Drug resistance

Release date: April 19, 2017
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 5ng5
Q-score: 0.326

Wang Z, Fan G, Hryc CF, Blaza JN, Serysheva II, Schmid MF, Chiu W, Luisi BF, Du D

eLife (2017) 6 [ DOI: doi:10.7554/eLife.24905 Pubmed: 28355133 ]

Sample:

Multidrug efflux pump accessory protein acrz (5 kDa, Protein from Escherichia coli)
Multidrug efflux pump subunit acrb (113 kDa, Protein from Escherichia coli)
Acrabtolc in apo state (Complex from Escherichia coli)
6-[2-(3,4-dimethoxyphenyl)ethylsulfanyl]-8-[4-(2-methoxyethyl)piperazin-1-yl]-3,3-dimethyl-1,4-dihydropyrano[3,4-c]pyridine-5-carbonitrile (526 Da, Ligand)
Multidrug efflux pump subunit acra (39 kDa, Protein from Escherichia coli)
Outer membrane protein tolc (53 kDa, Protein from Escherichia coli)

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EMD-8636

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multi-drug efflux; membrane transport; RND superfamily; Drug resistance

Release date: April 19, 2017
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 5v5s
Q-score: 0.193

Wang Z, Fan G, Hryc CF, Blaza JN, Serysheva II, Schmid MF, Chiu W, Luisi BF, Du D

eLife (2017) 6 [ DOI: doi:10.7554/eLife.24905 Pubmed: 28355133 ]

Sample:

Multidrug efflux pump subunit acrb (113 kDa, Protein from Escherichia coli )
Multidrug efflux pump subunit acra (42 kDa, Protein from Escherichia coli)
Acrabtolc in apo state (Complex from Escherichia coli)
Outer membrane protein tolc (48 kDa, Protein from Escherichia coli)

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Sort by: Download

Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

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Select database:

EMDB [5]

Format:

Select the script type:

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Preview first 10

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