Cryo-EM Structure of Full-Length Spike Protein of Omicron XBB.1.5
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8usz
Q-score: 0.483
Modjarrad K, Che Y, Chen W, Wu H, Cadima CI, Muik A, Maddur MS, Tompkins KR, Martinez LT, Cai H, Ramos M, Mensah S, Cumbia B, Falcao L, McKeen AP, Chang JS, Fennell KF, Huynh KW, McLellan TJ, Sahasrabudhe PV, Chen W, Cerswell M, Garcia MA, Li S, Sharma R, Li W, Dizon KP, Duarte S, Gillett F, Smith R, Illenberger DM, Efferen KS, Vogel AB, Anderson AS, Sahin U, Swanson KA
NPJ Vaccines (2024) 9 pp. 229-229 [ DOI: doi:10.1038/s41541-024-01013-9 Pubmed: 39567521 ]
Cryo-EM Structure of GPR61-G protein complex stabilized by scFv16
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 8tb0
Q-score: 0.438
Lees JA, Dias JM, Rajamohan F, Fortin JP, O'Connor R, Kong JX, Hughes EAG, Fisher EL, Tuttle JB, Lovett G, Kormos BL, Unwalla RJ, Zhang L, Dechert Schmitt AM, Zhou D, Moran M, Stevens KA, Fennell KF, Varghese AE, Maxwell A, Cote EE, Zhang Y, Han S
Nat Commun (2023) 14 pp. 5938-5938 [ DOI: doi:10.1038/s41467-023-41646-3 Pubmed: 37741852 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Gpr61 fused to dominant negative g alpha s/i n18 chimera (111 kDa, Protein from Homo sapiens)
- Single-chain fv16 (28 kDa, Protein from Homo sapiens)
- Gpr61-galphas-gbeta1-ggamma2 complex with single-chain fv16 (Complex from Homo sapiens)
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8tb7
Q-score: 0.517
Lees JA, Dias JM, Rajamohan F, Fortin JP, O'Connor R, Kong JX, Hughes EAG, Fisher EL, Tuttle JB, Lovett G, Kormos BL, Unwalla RJ, Zhang L, Dechert Schmitt AM, Zhou D, Moran M, Stevens KA, Fennell KF, Varghese AE, Maxwell A, Cote EE, Zhang Y, Han S
Nat Commun (2023) 14 pp. 5938-5938 [ DOI: doi:10.1038/s41467-023-41646-3 Pubmed: 37741852 ]
- Water (18 Da, Ligand)
- Fab hinge-binding nanobody (13 kDa, Protein from Lama glama)
- G-protein coupled receptor 61,soluble cytochrome b562 (59 kDa, Protein from Homo sapiens)
- Gpr61-icl3-bril chimera in complex with anti-bril fab24 bak5 and hinge-binding nanobody bound to inverse agonist compound 1 (Complex from Homo sapiens)
- Fab24 bak5 heavy chain (52 kDa, Protein from Homo sapiens)
- 6-{[(3,5-difluoropyridin-4-yl)methyl]amino}-n-(4-ethoxy-6-methylpyrimidin-2-yl)-2-methoxy-n-(2-methoxyethyl)pyridine-3-sulfonamide (524 Da, Ligand)
- Fab24 bak5 light chain (23 kDa, Protein from Homo sapiens)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8e4y
Q-score: 0.502
Johnson ZL, Ammirati M, Wasilko DJ, Chang JS, Noell S, Foley TL, Yoon H, Smith K, Asano S, Hales K, Wan M, Yang Q, Piotrowski MA, Farley KA, Gilbert T, Aschenbrenner LM, Fennell KF, Dutra JK, Xu M, Guo C, Varghese AE, Bellenger J, Quinn A, Am Ende CW, West GM, Griffor MC, Bennett D, Calabrese M, Steppan CM, Han S, Wu H
Nat Struct Mol Biol (2023) 30 pp. 22-30 [ Pubmed: 36522428 DOI: doi:10.1038/s41594-022-00884-7 ]
- [(2r,3s,4r,5r)-5-(6-amino-9h-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methyl (3r)-3-hydroxy-2,2-dimethyl-4-oxo-4-{[3-oxo-3-({2-[(2-oxohexadecyl)sulfanyl]ethyl}amino)propyl]amino}butyl dihydrogen diphosphate (non-preferred name) (1 kDa, Ligand)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl hexadecanoate (410 Da, Ligand)
- Glycerol-3-phosphate acyltransferase 1, mitochondrial (86 kDa, Protein from Homo sapiens)
- Glycerol-3-phosphate acyltransferase 1 (86 kDa, Complex from Homo sapiens)
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 8e50
Q-score: 0.444
Johnson ZL, Ammirati M, Wasilko DJ, Chang JS, Noell S, Foley TL, Yoon H, Smith K, Asano S, Hales K, Wan M, Yang Q, Piotrowski MA, Farley KA, Gilbert T, Aschenbrenner LM, Fennell KF, Dutra JK, Xu M, Guo C, Varghese AE, Bellenger J, Quinn A, Am Ende CW, West GM, Griffor MC, Bennett D, Calabrese M, Steppan CM, Han S, Wu H
Nat Struct Mol Biol (2023) 30 pp. 22-30 [ Pubmed: 36522428 DOI: doi:10.1038/s41594-022-00884-7 ]
- Coenzyme a (767 Da, Ligand)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl hexadecanoate (410 Da, Ligand)
- Glycerol-3-phosphate acyltransferase 1, mitochondrial (86 kDa, Protein from Homo sapiens)
- Glycerol-3-phosphate acyltransferase 1 (86 kDa, Complex from Homo sapiens)
CryoEM structure of human alpha4beta2 nicotinic acetylcholine receptor in complex with varenicline
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 6ur8
Q-score: 0.448
Mukherjee S, Erramilli SK, Ammirati M, Alvarez FJD, Fennell KF, Purdy MD, Skrobek BM, Radziwon K, Coukos J, Kang Y, Dutka P, Gao X, Qiu X, Yeager M, Eric Xu H, Han S, Kossiakoff AA
Nat Commun (2020) 11 pp. 1598-1598 [ Pubmed: 32221310 DOI: doi:10.1038/s41467-020-15363-0 ]
- Neuronal acetylcholine receptor subunit beta-2 (45 kDa, Protein from Homo sapiens)
- Human alpha4beta2 nicotinic acetylcholine receptor in complex fab fragments and bound to varenicline (Complex from Homo sapiens)
- Beta-d-mannopyranose (180 Da, Ligand)
- Varenicline (211 Da, Ligand)
- Chimera of soluble cytochrome b562 (bril) and neuronal acetylcholine receptor subunit alpha-4 (56 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 6usf
Q-score: 0.394
Mukherjee S, Erramilli SK, Ammirati M, Alvarez FJD, Fennell KF, Purdy MD, Skrobek BM, Radziwon K, Coukos J, Kang Y, Dutka P, Gao X, Qiu X, Yeager M, Eric Xu H, Han S, Kossiakoff AA
Nat Commun (2020) 11 pp. 1598-1598 [ Pubmed: 32221310 DOI: doi:10.1038/s41467-020-15363-0 ]
- Neuronal acetylcholine receptor subunit beta-2 (45 kDa, Protein from Homo sapiens)
- Human alpha4beta2 nicotinic acetylcholine receptor in complex fab fragments and bound to varenicline (Complex from Homo sapiens)
- Fab heavy chain (24 kDa, Protein from Homo sapiens)
- Fab light chain (23 kDa, Protein from Homo sapiens)
- Chimera of soluble cytochrome b562 (bril) and neuronal acetylcholine receptor subunit alpha-4 (55 kDa, Protein from Homo sapiens)
- Varenicline (211 Da, Ligand)
- Beta-d-mannopyranose (180 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)