Resolution: 18.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8rbs
Q-score: 0.048
Homola M, Buttner CR, Fuzik T, Krepelka P, Holbova R, Novacek J, Chaillet ML, Zak J, Grybchuk D, Forster F, Wilson WH, Schroeder DC, Plevka P
Sci Adv (2024) 10 pp. eadk1954-eadk1954 [ Pubmed: 38598627 DOI: doi:10.1126/sciadv.adk1954 ]
- Major capsid protein (55 kDa, Protein from Emiliania huxleyi virus 201)
- Emiliania huxleyi virus 201 (Virus from Emiliania huxleyi virus 201)
- Penton protein (72 kDa, Protein from Emiliania huxleyi virus 201)
Resolution: 12.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8rbt
Q-score: 0.097
Homola M, Buttner CR, Fuzik T, Krepelka P, Holbova R, Novacek J, Chaillet ML, Zak J, Grybchuk D, Forster F, Wilson WH, Schroeder DC, Plevka P
Sci Adv (2024) 10 pp. eadk1954-eadk1954 [ Pubmed: 38598627 DOI: doi:10.1126/sciadv.adk1954 ]
- Major capsid protein (55 kDa, Protein from Emiliania huxleyi virus 201)
- Emiliania huxleyi virus 201 (Virus from Emiliania huxleyi virus 201)
- Penton protein (72 kDa, Protein from Emiliania huxleyi virus 201)
human MutSalpha (MSH2/MSH6) binding to DNA with a GT mismatch
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8ag6
Q-score: 0.542
Bruekner SR, Pieters W, Fish A, Liaci AM, Scheffers S, Rayner E, Kaldenbach D, Drost L, Dekker M, van Hees-Stuivenberg S, Delzenne-Goette E, de Konink C, Houlleberghs H, Dubbink HJ, AlSaegh A, de Wind N, Forster F, Te Riele H, Sixma TK
Nucleic Acids Res (2023) 51 pp. 1173-1188 [ Pubmed: 36715327 DOI: doi:10.1093/nar/gkad015 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Mutsalpha on mismatched dna (31 kDa, Complex from Homo sapiens)
- Dna (50-mer) (15 kDa, DNA from synthetic construct)
- Dna (50-mer) (15 kDa, DNA from synthetic construct)
- Dna containing a g/t mismatch (Complex from Homo sapiens)
- Msh2 (Complex from Homo sapiens)
- Dna mismatch repair protein msh6 (158 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Dna mismatch repair protein msh2 (104 kDa, Protein from Homo sapiens)
- Msh6 (Complex from Homo sapiens)
Subtomogram average of the human Sec61-TRAP-OSTA-translocon
Resolution: 7.6 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8b6l
Q-score: 0.133
Gemmer M, Chaillet ML, van Loenhout J, Cuevas Arenas R, Vismpas D, Grollers-Mulderij M, Koh FA, Albanese P, Scheltema RA, Howes SC, Kotecha A, Fedry J, Forster F
Nature (2023) 614 pp. 160-167 [ DOI: doi:10.1038/s41586-022-05638-5 Pubmed: 36697828 ]
- Translocon-associated protein subunit gamma (21 kDa, Protein from Homo sapiens)
- Protein transport protein sec61 subunit alpha isoform 1 (52 kDa, Protein from Homo sapiens)
- Signal peptide mix (1 kDa, Protein from Homo sapiens)
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kda subunit (50 kDa, Protein from Homo sapiens)
- Sec61-trap-osta translocon complex (Cellular component from Homo sapiens)
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (69 kDa, Protein from Homo sapiens)
- Translocon-associated protein subunit alpha (32 kDa, Protein from Homo sapiens)
- Oligosaccharyltransferase complex subunit ostc (16 kDa, Protein from Homo sapiens)
- Translocon-associated protein subunit beta (20 kDa, Protein from Homo sapiens)
- Transmembrane protein 258 (9 kDa, Protein from Homo sapiens)
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit dad1 (12 kDa, Protein from Homo sapiens)
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 (68 kDa, Protein from Homo sapiens)
- Protein transport protein sec61 subunit gamma (7 kDa, Protein from Homo sapiens)
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3a (80 kDa, Protein from Homo sapiens)
- Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4 (4 kDa, Protein from Homo sapiens)
- Protein transport protein sec61 subunit beta (9 kDa, Protein from Homo sapiens)
- Translocon-associated protein subunit delta (19 kDa, Protein from Homo sapiens)
CryoEM Structure of Extended eEF1A bound to the Ribosome in the Classical Pre State
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8b6z
Q-score: 0.306
Gemmer M, Chaillet ML, van Loenhout J, Cuevas Arenas R, Vismpas D, Grollers-Mulderij M, Koh FA, Albanese P, Scheltema RA, Howes SC, Kotecha A, Fedry J, Forster F
Nature (2023) 614 pp. 160-167 [ DOI: doi:10.1038/s41586-022-05638-5 Pubmed: 36697828 ]
- Elongation factor 1-alpha 2 (50 kDa, Protein from Homo sapiens)
- 28s ribosomal rna (1 MDa, RNA from Homo sapiens)
- Ribosome in the classical pre+ state (Complex from Homo sapiens)
Large subunit of the Chlamydomonas reinhardtii mitoribosome
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7pkt
Q-score: 0.486
Waltz F, Salinas-Giege T, Englmeier R, Meichel H, Soufari H, Kuhn L, Pfeffer S, Forster F, Engel BD, Giege P, Drouard L, Hashem Y
Nat Commun (2021) 12 pp. 7176-7176 [ Pubmed: 34887394 DOI: doi:10.1038/s41467-021-27200-z ]
- Bl32m (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ml43 (16 kDa, Protein from Chlamydomonas reinhardtii)
- Unk1 (2 kDa, Protein from Chlamydomonas reinhardtii)
- Ul29m (14 kDa, Protein from Chlamydomonas reinhardtii)
- Ppr* (14 kDa, Protein from Chlamydomonas reinhardtii)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Mitochondrial ribosomal protein l33 (6 kDa, Protein from Chlamydomonas reinhardtii)
- Ml114 (48 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l17 (27 kDa, Protein from Chlamydomonas reinhardtii)
- Kow domain-containing protein,ul24m (31 kDa, Protein from Chlamydomonas reinhardtii)
- Bl27m (18 kDa, Protein from Chlamydomonas reinhardtii)
- L4 rrna (38 kDa, RNA from Chlamydomonas reinhardtii)
- Ribosomal_tl5_c domain-containing protein (38 kDa, Protein from Chlamydomonas reinhardtii)
- Ml115 (72 kDa, Protein from Chlamydomonas reinhardtii)
- Ml119 (36 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l30 domain-containing protein (24 kDa, Protein from Chlamydomonas reinhardtii)
- Ml117 (75 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l17,bl17m (21 kDa, Protein from Chlamydomonas reinhardtii)
- Bl36m (3 kDa, Protein from Chlamydomonas reinhardtii)
- Ul4m (45 kDa, Protein from Chlamydomonas reinhardtii)
- Ul3m (44 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l18e/l15p domain-containing protein (35 kDa, Protein from Chlamydomonas reinhardtii)
- Ul5m (23 kDa, Protein from Chlamydomonas reinhardtii)
- Ul22m (39 kDa, Protein from Chlamydomonas reinhardtii)
- L6 rrna (43 kDa, RNA from Chlamydomonas reinhardtii)
- Bl21m (40 kDa, Protein from Chlamydomonas reinhardtii)
- 50s ribosomal protein l9, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l23 (25 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l2_c domain-containing protein (41 kDa, Protein from Chlamydomonas reinhardtii)
- Ml80 (27 kDa, Protein from Chlamydomonas reinhardtii)
- L3b rrna (59 kDa, RNA from Chlamydomonas reinhardtii)
- Unk2 (4 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l13 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Ml41 (12 kDa, Protein from Chlamydomonas reinhardtii)
- L5 rrna (47 kDa, RNA from Chlamydomonas reinhardtii)
- Bl28m (17 kDa, Protein from Chlamydomonas reinhardtii)
- Bl35m (17 kDa, Protein from Chlamydomonas reinhardtii)
- L2a rrna (27 kDa, RNA from Chlamydomonas reinhardtii)
- Plastid ribosomal protein l6 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Chlamydomonas reinhardtii)
- L1 rrna (51 kDa, RNA from Chlamydomonas reinhardtii)
- Magnesium ion (24 Da, Ligand)
- Ml113 (84 kDa, Protein from Chlamydomonas reinhardtii)
- Ml40 (17 kDa, Protein from Chlamydomonas reinhardtii)
- Zinc ion (65 Da, Ligand)
- Bl34m (29 kDa, Protein from Chlamydomonas reinhardtii)
- L7 rrna (186 kDa, RNA from Chlamydomonas reinhardtii)
- Ul14m (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ml59/64 (14 kDa, Protein from Chlamydomonas reinhardtii)
- 50s ribosomal protein l20 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ml116 (53 kDa, Protein from Chlamydomonas reinhardtii)
- Ml118 (64 kDa, Protein from Chlamydomonas reinhardtii)
- Large subunit of the mitochondrial ribosome of chlamydomonas reinhardtii (Complex from Chlamydomonas reinhardtii)
- L8 rrna (132 kDa, RNA from Chlamydomonas reinhardtii)
- Ml87 (23 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l16 domain-containing protein (27 kDa, Protein from Chlamydomonas reinhardtii)
- Ml63/57/60 (14 kDa, Protein from Chlamydomonas reinhardtii)
- L3a rrna (5s) (24 kDa, RNA from Chlamydomonas reinhardtii)
Human Signal Peptidase Complex Paralog A (SPC-A)
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 7p2p
Q-score: 0.232
Liaci AM, Steigenberger B, Telles de Souza PC, Tamara S, Grollers-Mulderij M, Ogrissek P, Marrink SJ, Scheltema RA, Forster F
Mol Cell (2021) 81 pp. 3934-3948.e11 [ DOI: doi:10.1016/j.molcel.2021.07.031 Pubmed: 34388369 ]
- Signal peptidase complex subunit 3 (spc22/23) (Complex from Homo sapiens)
- Signal peptidase complex subunit 1 (spc12) (Complex from Homo sapiens)
- Signal peptidase complex paralog a (spc-a) (20 kDa, Complex from Homo sapiens)
- Signal peptidase complex subunit 1 (20 kDa, Protein from Homo sapiens)
- Signal peptidase complex catalytic subunit a (sec11a) (Complex from Homo sapiens)
- Signal peptidase complex subunit 3 (22 kDa, Protein from Homo sapiens)
- Signal peptidase complex subunit 2 (spc25) (Complex from Homo sapiens)
- Signal peptidase complex catalytic subunit sec11a (22 kDa, Protein from Homo sapiens)
- Signal peptidase complex subunit 2 (27 kDa, Protein from Homo sapiens)
Human Signal Peptidase Complex Paralog C (SPC-C)
Resolution: 4.9 Å
EM Method: Single-particle
Fitted PDBs: 7p2q
Q-score: 0.237
Liaci AM, Steigenberger B, Telles de Souza PC, Tamara S, Grollers-Mulderij M, Ogrissek P, Marrink SJ, Scheltema RA, Forster F
Mol Cell (2021) 81 pp. 3934-3948.e11 [ DOI: doi:10.1016/j.molcel.2021.07.031 Pubmed: 34388369 ]
- Signal peptidase complex subunit 3 (spc22/23) (Complex from Homo sapiens)
- Signal peptidase complex catalytic subunit c (sec11c) (Complex from Homo sapiens)
- Signal peptidase complex subunit 1 (spc12) (Complex from Homo sapiens)
- Signal peptidase complex subunit 1 (20 kDa, Protein from Homo sapiens)
- Signal peptidase complex subunit 3 (22 kDa, Protein from Homo sapiens)
- Signal peptidase complex subunit 2 (spc25) (Complex from Homo sapiens)
- Signal peptidase complex subunit 2 (27 kDa, Protein from Homo sapiens)
- Signal peptidase complex catalytic subunit sec11c (23 kDa, Protein from Homo sapiens)
- Signal peptidase complex paralog c (spc-c) (20 kDa, Complex from Homo sapiens)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7akd
Q-score: 0.413
Fedry J, Hurdiss DL, Wang C, Li W, Obal G, Drulyte I, Du W, Howes SC, van Kuppeveld FJM, Forster F, Bosch BJ
Sci Adv (2021) 7 [ Pubmed: 33958322 DOI: doi:10.1126/sciadv.abf5632 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Complex of the sars-cov-2 spike glycoprotein with the 47d11 neutralizing antibody fab fragment (550 kDa, Complex from Homo sapiens)
- Alpha-l-fucopyranose (164 Da, Ligand)
- 47d11 neutralizing antibody light chain (11 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 47d11 neutralizing antibody heavy chain (13 kDa, Protein from Homo sapiens)
- Alpha-d-mannopyranose (180 Da, Ligand)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7akj
Q-score: 0.464
Fedry J, Hurdiss DL, Wang C, Li W, Obal G, Drulyte I, Du W, Howes SC, van Kuppeveld FJM, Forster F, Bosch BJ
Sci Adv (2021) 7 [ Pubmed: 33958322 DOI: doi:10.1126/sciadv.abf5632 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 47d11 neutralizing antibody light chain (11 kDa, Protein from Homo sapiens)
- Complex of the sars-cov-2 spike glycoprotein with the 47d11 neutralizing antibody fab fragment (600 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 47d11 neutralizing antibody heavy chain (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein (132 kDa, Protein from SARS coronavirus WH20)