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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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author:"Frost A" AND sample_type:"ligand" AND author_name:"Js"

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Showing 1 - 6 of 6. Page 1 of 1

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EMD-23539

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Cfr-modified 50S subunit from Escherichia coli

Release date: Dec. 15, 2021
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 7lvk
Q-score: 0.646

Tsai K, Stojkovic V, Noda-Garcia L, Myasnikov AG, Young ID, Palla A, Venkataramanan S, Floor S, Fraser JS, Frost A, Tawfik DS, Fujimori DG

To Be Published

Sample:

50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
Sodium ion (22 Da, Ligand)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
23s rrna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
5s rrna (38 kDa, RNA from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
Water (18 Da, Ligand)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
Escherichia coli 50s subunit (Complex from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)

[Show more]

EMD-11732

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Cryo-EM structure of human ER membrane protein complex in lipid nanodiscs

Release date: Dec. 2, 2020
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 7ado
Q-score: 0.458

Miller-Vedam LE, Brauning B, Popova KD, Schirle Oakdale NT, Bonnar JL, Prabu JR, Boydston EA, Sevillano N, Shurtleff MJ, Stroud RM, Craik CS, Schulman BA, Frost A, Weissman JS

eLife (2020) 9 [ Pubmed: 33236988 DOI: doi:10.7554/eLife.62611 ]

Sample:

Er membrane protein complex subunit 6 (12 kDa, Protein from Homo sapiens)
Human endoplasmic reticulum membrane protein complex (emc) in popc nanodiscs (300 kDa, Complex from Homo sapiens)
Membrane magnesium transporter 1 (15 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 10 (27 kDa, Protein from Homo sapiens)
Unassigned helix (1 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 8 (23 kDa, Protein from Homo sapiens)
2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Er membrane protein complex subunit 1 (111 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 4 (20 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 2 (34 kDa, Protein from Homo sapiens)
1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
Er membrane protein complex subunit 7 (26 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 3 (29 kDa, Protein from Homo sapiens)

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EMD-11733

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Cryo-EM structure of human ER membrane protein complex in GDN detergent

Release date: Dec. 2, 2020
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7adp
Q-score: 0.43

Miller-Vedam LE, Brauning B, Popova KD, Schirle Oakdale NT, Bonnar JL, Prabu JR, Boydston EA, Sevillano N, Shurtleff MJ, Stroud RM, Craik CS, Schulman BA, Frost A, Weissman JS

eLife (2020) 9 [ Pubmed: 33236988 DOI: doi:10.7554/eLife.62611 ]

Sample:

Er membrane protein complex subunit 6 (12 kDa, Protein from Homo sapiens)
Human endoplasmic reticulum membrane protein complex (emc) in popc nanodiscs (300 kDa, Complex from Homo sapiens)
Membrane magnesium transporter 1 (15 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 10 (27 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 8 (23 kDa, Protein from Homo sapiens)
2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Er membrane protein complex subunit 1 (111 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 4 (20 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 2 (34 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 3 (29 kDa, Protein from Homo sapiens)

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EMD-23003

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Cryo-EM structure of Saccharomyces cerevisiae ER membrane protein complex bound to Fab-DH4 in lipid nanodiscs

Release date: Dec. 2, 2020
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7kra
Q-score: 0.474

Miller-Vedam LE, Brauning B, Popova KD, Schirle Oakdale NT, Bonnar JL, Prabu JR, Boydston EA, Sevillano N, Shurtleff MJ, Stroud RM, Craik CS, Schulman BA, Frost A, Weissman JS

eLife (2020) 9 [ Pubmed: 33236988 DOI: doi:10.7554/eLife.62611 ]

Sample:

Unassigned helix (2 kDa, Protein from Saccharomyces cerevisiae)
Er membrane protein complex subunit 5 (20 kDa, Protein from Saccharomyces cerevisiae)
Er membrane protein complex subunit 3 (28 kDa, Protein from Saccharomyces cerevisiae)
Er membrane protein complex subunit 6 (12 kDa, Protein from Saccharomyces cerevisiae)
Endoplasmic reticulum membrane protein complex subunit 10 (22 kDa, Protein from Saccharomyces cerevisiae)
2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Endoplasmic reticulum membrane protein complex (Complex from Saccharomyces cerevisiae)
S. cerevisiae endoplasmic reticulum membrane protein complex (emc) bound to fab dh4 in yeast total extract lipid nanodiscs (Complex)
Er membrane protein complex subunit 2 (33 kDa, Protein from Saccharomyces cerevisiae)
[(2~{r})-1-octanoyloxy-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propan-2-yl] nonanoate (524 Da, Ligand)
Er membrane protein complex subunit 4 (21 kDa, Protein from Saccharomyces cerevisiae)
Fab dh4 heavy chain (26 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 1 (87 kDa, Protein from Saccharomyces cerevisiae)
Fab dh4 light chain (25 kDa, Protein from Homo sapiens)
Fab dh4 (Complex from Homo sapiens)
Protein sop4 (26 kDa, Protein from Saccharomyces cerevisiae)

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EMD-23033

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Cryo-EM structure of Saccharomyces cerevisiae ER membrane protein complex bound to a Fab in DDM detergent

Release date: Dec. 2, 2020
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7ktx
Q-score: 0.287

Miller-Vedam LE, Brauning B, Popova KD, Schirle Oakdale NT, Bonnar JL, Prabu JR, Boydston EA, Sevillano N, Shurtleff MJ, Stroud RM, Craik CS, Schulman BA, Frost A, Weissman JS

eLife (2020) 9 [ Pubmed: 33236988 DOI: doi:10.7554/eLife.62611 ]

Sample:

S. cerevisiae endoplasmic reticulum membrane protein complex (emc) bound to fab in ddm detergent (Complex)
Er membrane protein complex subunit 3 (28 kDa, Protein from Saccharomyces cerevisiae BY4743)
Unassigned helix (2 kDa, Protein from Saccharomyces cerevisiae BY4743)
Er membrane protein complex subunit 4 (21 kDa, Protein from Saccharomyces cerevisiae BY4743)
2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Er membrane protein complex subunit 5 (20 kDa, Protein from Saccharomyces cerevisiae BY4743)
Protein sop4 (26 kDa, Protein from Saccharomyces cerevisiae BY4743)
Er membrane protein complex subunit 2 (33 kDa, Protein from Saccharomyces cerevisiae BY4743)
Fab dh4 heavy chain (26 kDa, Protein from Homo sapiens)
Er membrane protein complex subunit 6 (12 kDa, Protein from Saccharomyces cerevisiae BY4743)
Fab dh4 light chain (25 kDa, Protein from Homo sapiens)
Endoplasmic reticulum membrane protein complex (Complex from Saccharomyces cerevisiae BY4743)
Endoplasmic reticulum membrane protein complex subunit 10 (22 kDa, Protein from Saccharomyces cerevisiae BY4743)
Er membrane protein complex subunit 1 (87 kDa, Protein from Saccharomyces cerevisiae BY4743)
Fab dh4 (Complex from Homo sapiens)

[Show more]

EMD-20353

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High resolution cryo-EM structure of E.coli 50S

Release date: Jan. 22, 2020
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 6pj6
Q-score: 0.616

Stojkovic V, Myasnikov AG, Young ID, Frost A, Fraser JS, Fujimori DG

Nucleic Acids Res (2020) 48 pp. 2723-2732 [ Pubmed: 31989172 DOI: doi:10.1093/nar/gkaa037 ]

Sample:

50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli )
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli )
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli )
Sodium ion (22 Da, Ligand)
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli )
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
5s rrna (38 kDa, RNA from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli )
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli )
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli )
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli )
Water (18 Da, Ligand)
23s rrna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
Escherichia coli 50s subunit (Complex from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)

[Show more]

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Showing 1 - 6 of 6. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [6]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

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