Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ssp
Q-score: 0.481
Manicki M, Aydin H, Abriata LA, Overmyer KA, Guerra RM, Coon JJ, Dal Peraro M, Frost A, Pagliarini DJ
Mol Cell (2022) 82 pp. 4307-4323.e10 [ Pubmed: 36306796 DOI: doi:10.1016/j.molcel.2022.10.003 ]
- Ubiquinone biosynthesis protein coq9, mitochondrial (35 kDa, Protein from Homo sapiens)
- 5-demethoxyubiquinone hydroxylase, mitochondrial (24 kDa, Protein from Homo sapiens)
- Human coq7:coq9 complex (Complex from Homo sapiens)
Structure of the NADH-bound human COQ7:COQ9 complex by single-particle electron cryo-microscopy
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7sss
Q-score: 0.599
Manicki M, Aydin H, Abriata LA, Overmyer KA, Guerra RM, Coon JJ, Dal Peraro M, Frost A, Pagliarini DJ
Mol Cell (2022) 82 pp. 4307-4323.e10 [ Pubmed: 36306796 DOI: doi:10.1016/j.molcel.2022.10.003 ]
- 5-demethoxyubiquinone hydroxylase, mitochondrial (24 kDa, Protein from Homo sapiens)
- Human coq7:coq9 complex (Complex from Homo sapiens)
- 2-[(2e,6e,10e,14e,18e,22e,26e)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaenyl]phenol (639 Da, Ligand)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- (1s)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (720 Da, Ligand)
- Ubiquinone biosynthesis protein coq9, mitochondrial (35 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7trj
Q-score: 0.511
Boone M, Wang L, Lawrence R, Frost A, Walter P, Schoof M
eLife (2022) 11 [ DOI: doi:10.7554/eLife.76171 Pubmed: 35416150 ]
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b decamer (500 kDa, Complex from Homo sapiens)
- Translation initiation factor eif-2b subunit alpha (33 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit beta (39 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7rlo
Q-score: 0.546
Schoof M, Wang L, Cogan JZ, Lawrence RE, Boone M, Wuerth JD, Frost A, Walter P
Nat Commun (2021) 12 pp. 7103-7103 [ DOI: doi:10.1038/s41467-021-26164-4 Pubmed: 34876554 ]
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
- Nss protein of sandfly fever sicilian phlebovirus (Complex from Sandfly fever Sicilian virus)
- Translation initiation factor eif-2b subunit alpha (33 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2b in complex with sfsv nss (500 kDa, Complex)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit beta (39 kDa, Protein from Homo sapiens)
- Non-structural protein ns-s (30 kDa, Protein from Sandfly fever sicilian virus)
- Translation initiation factor eif-2b subunit (Complex from Homo sapiens)
Cfr-modified 50S subunit from Escherichia coli
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 7lvk
Q-score: 0.646
Tsai K, Stojkovic V, Noda-Garcia L, Myasnikov AG, Young ID, Palla A, Venkataramanan S, Floor S, Fraser JS, Frost A, Tawfik DS, Fujimori DG
To Be Published
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- Escherichia coli 50s subunit (Complex from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- Sodium ion (22 Da, Ligand)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
The eukaryotic translation initiation factor 2B from Homo sapiens in its apo form
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7l70
Q-score: 0.509
Schoof M, Boone M, Wang L, Lawrence R, Frost A, Walter P
eLife (2021) 10 [ DOI: doi:10.7554/eLife.65703 Pubmed: 33688831 ]
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit beta (41 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b decamer (500 kDa, Complex from Homo sapiens)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit alpha (35 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)
Resolution: 3.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 7jk9
Q-score: 0.518
Nguyen HC, Melo AA, Kruk J, Frost A, Gabruk M
Nat Plants (2021) 7 pp. 437-444 [ Pubmed: 33875834 DOI: doi:10.1038/s41477-021-00885-2 ]
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Light-dependent protochlorophyllide oxidoreductase bound to nadph, pchlide, and lipid membrane (Complex from Arabidopsis thaliana)
- Protochlorophyllide reductase b, chloroplastic (43 kDa, Protein from Arabidopsis thaliana)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Protochlorophyllide (612 Da, Ligand)
Cryo-EM structure of heavy chain mouse apoferritin
Resolution: 1.655 Å
EM Method: Single-particle
Fitted PDBs: 7kod
Q-score: 0.753
Sun M, Azumaya CM, Tse E, Bulkley DP, Harrington MB, Gilbert G, Frost A, Southworth D, Verba KA, Cheng Y, Agard DA
J Struct Biol (2021) 213 pp. 107745-107745 [ Pubmed: 33984504 DOI: doi:10.1016/j.jsb.2021.107745 ]
- Water (18 Da, Ligand)
- Heavy chain mouse apoferritin (Complex from Mus musculus)
- Ferritin heavy chain (21 kDa, Protein from Mus musculus)
Cryo-EM structure of human ER membrane protein complex in lipid nanodiscs
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 7ado
Q-score: 0.458
Miller-Vedam LE, Brauning B, Popova KD, Schirle Oakdale NT, Bonnar JL, Prabu JR, Boydston EA, Sevillano N, Shurtleff MJ, Stroud RM, Craik CS, Schulman BA, Frost A, Weissman JS
eLife (2020) 9 [ DOI: doi:10.7554/eLife.62611 Pubmed: 33236988 ]
- Er membrane protein complex subunit 10 (27 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 2 (34 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Er membrane protein complex subunit 1 (111 kDa, Protein from Homo sapiens)
- Unassigned helix (1 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 4 (20 kDa, Protein from Homo sapiens)
- 1,2-dioleoyl-sn-glycero-3-phosphocholine (787 Da, Ligand)
- Human endoplasmic reticulum membrane protein complex (emc) in popc nanodiscs (300 kDa, Complex from Homo sapiens)
- Er membrane protein complex subunit 3 (29 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 8 (23 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 7 (26 kDa, Protein from Homo sapiens)
- Membrane magnesium transporter 1 (15 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 6 (12 kDa, Protein from Homo sapiens)
Cryo-EM structure of human ER membrane protein complex in GDN detergent
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7adp
Q-score: 0.43
Miller-Vedam LE, Brauning B, Popova KD, Schirle Oakdale NT, Bonnar JL, Prabu JR, Boydston EA, Sevillano N, Shurtleff MJ, Stroud RM, Craik CS, Schulman BA, Frost A, Weissman JS
eLife (2020) 9 [ DOI: doi:10.7554/eLife.62611 Pubmed: 33236988 ]
- Er membrane protein complex subunit 10 (27 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 2 (34 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Er membrane protein complex subunit 1 (111 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 4 (20 kDa, Protein from Homo sapiens)
- Human endoplasmic reticulum membrane protein complex (emc) in popc nanodiscs (300 kDa, Complex from Homo sapiens)
- Er membrane protein complex subunit 3 (29 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 8 (23 kDa, Protein from Homo sapiens)
- Membrane magnesium transporter 1 (15 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 6 (12 kDa, Protein from Homo sapiens)