Structure of the NADH-bound human COQ7:COQ9 complex by single-particle electron cryo-microscopy
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7sss
Q-score: 0.599
Manicki M, Aydin H, Abriata LA, Overmyer KA, Guerra RM, Coon JJ, Dal Peraro M, Frost A, Pagliarini DJ
Mol Cell (2022) 82 pp. 4307-4323.e10 [ Pubmed: 36306796 DOI: doi:10.1016/j.molcel.2022.10.003 ]
- Water (18 Da, Ligand)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- 5-demethoxyubiquinone hydroxylase, mitochondrial (24 kDa, Protein from Homo sapiens)
- Human coq7:coq9 complex (Complex from Homo sapiens)
- Ubiquinone biosynthesis protein coq9, mitochondrial (35 kDa, Protein from Homo sapiens)
- 2-[(2e,6e,10e,14e,18e,22e,26e)-3,7,11,15,19,23,27,31-octamethyldotriaconta-2,6,10,14,18,22,26,30-octaenyl]phenol (639 Da, Ligand)
- (1s)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (720 Da, Ligand)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7trj
Q-score: 0.511
Boone M, Wang L, Lawrence R, Frost A, Walter P, Schoof M
eLife (2022) 11 [ DOI: doi:10.7554/eLife.76171 Pubmed: 35416150 ]
- Translation initiation factor eif-2b decamer (500 kDa, Complex from Homo sapiens)
- Translation initiation factor eif-2b subunit alpha (33 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit beta (39 kDa, Protein from Homo sapiens)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7rlo
Q-score: 0.546
Schoof M, Wang L, Cogan JZ, Lawrence RE, Boone M, Wuerth JD, Frost A, Walter P
Nat Commun (2021) 12 pp. 7103-7103 [ DOI: doi:10.1038/s41467-021-26164-4 Pubmed: 34876554 ]
- Translation initiation factor eif-2b subunit alpha (33 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 2b in complex with sfsv nss (500 kDa, Complex)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Non-structural protein ns-s (30 kDa, Protein from Sandfly fever sicilian virus)
- Translation initiation factor eif-2b subunit beta (39 kDa, Protein from Homo sapiens)
- Nss protein of sandfly fever sicilian phlebovirus (Complex from Sandfly fever Sicilian virus)
- Translation initiation factor eif-2b subunit (Complex from Homo sapiens)
Cfr-modified 50S subunit from Escherichia coli
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 7lvk
Q-score: 0.646
Tsai K, Stojkovic V, Noda-Garcia L, Myasnikov AG, Young ID, Palla A, Venkataramanan S, Floor S, Fraser JS, Frost A, Tawfik DS, Fujimori DG
To Be Published
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- Sodium ion (22 Da, Ligand)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- Escherichia coli 50s subunit (Complex from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
The eukaryotic translation initiation factor 2B from Homo sapiens in its apo form
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7l70
Q-score: 0.509
Schoof M, Boone M, Wang L, Lawrence R, Frost A, Walter P
eLife (2021) 10 [ DOI: doi:10.7554/eLife.65703 Pubmed: 33688831 ]
- Translation initiation factor eif-2b decamer (500 kDa, Complex from Homo sapiens)
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit beta (41 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit alpha (35 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)
High resolution cryo-EM structure of E.coli 50S
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 6pj6
Q-score: 0.616
Stojkovic V, Myasnikov AG, Young ID, Frost A, Fraser JS, Fujimori DG
Nucleic Acids Res (2020) 48 pp. 2723-2732 [ Pubmed: 31989172 DOI: doi:10.1093/nar/gkaa037 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli )
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- Sodium ion (22 Da, Ligand)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- Escherichia coli 50s subunit (Complex from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli )
- Water (18 Da, Ligand)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli )
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
CryoEM reconstruction of IST1-CHMP1B copolymer filament bound to ssDNA at 2.9 Angstrom resolution
Resolution: 2.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 6e8g
Q-score: 0.537
Talledge N, McCullough J, Wenzel DM, Nguyen HC, Lalonde M, Bajorek M, Skalicky JJ, Frost A, Sundquist WI
bioRxiv (2018) [ DOI: doi:10.1101/386532 ]
- Ist1 homolog (40 kDa, Protein from Homo sapiens)
- Charged multivesicular body protein 1b (22 kDa, Protein from Homo sapiens)
- Helical assembly of ist1 and chmp1b protein bound to ssdna (Complex from Homo sapiens)
Electron cryo-microscopy of the eukaryotic translation initiation factor 2B from Homo sapiens
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6caj
Q-score: 0.453
Tsai JC, Miller-Vedam LE, Anand AA, Jaishankar P, Nguyen HC, Renslo AR, Frost A, Walter P
Science (2018) 359 [ Pubmed: 29599213 DOI: doi:10.1126/science.aaq0939 ]
- Translation initiation factor eif-2b subunit alpha (33 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit delta (57 kDa, Protein from Homo sapiens)
- 2-(4-chloranylphenoxy)-~{n}-[4-[2-(4-chloranylphenoxy)ethanoylamino]cyclohexyl]ethanamide (451 Da, Ligand)
- Translation initiation factor eif-2b subunit gamma (50 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b subunit beta (41 kDa, Protein from Homo sapiens)
- Translation initiation factor eif-2b decamer (Complex from Homo sapiens)
- Translation initiation factor eif-2b subunit epsilon (80 kDa, Protein from Homo sapiens)