Cryo-EM structure of CCHFV envelope protein Gc trimer in complex with Gc13 Fab
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8jkd
Q-score: 0.612
CCHFV envelope protein Gc in complex with Gc8
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8jlw
Q-score: 0.513
Li L, Chong T, Peng L, Liu Y, Rao G, Fu Y, Shu Y, Shen J, Xiao Q, Liu J, Li J, Deng F, Yan B, Hu Z, Cao S, Wang M
PLoS Pathog (2024) 20 pp. e1011948-e1011948 [ DOI: doi:10.1371/journal.ppat.1011948 Pubmed: 38300972 ]
- Mouse antibody gc8 heavy chain (12 kDa, Protein from Mus musculus)
- Glycoprotein c,cchfv envelope protein gc fusion loops (65 kDa, Protein from Crimean-Congo hemorrhagic fever orthonairovirus)
- Mouse antibody gc8 light chain (11 kDa, Protein from Mus musculus)
- Cchfv envelope protein gc-gc8 complex (Complex from Crimean-Congo hemorrhagic fever virus strain IbAr10200)
CCHFV envelope protein Gc in complex with Gc13
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8jlx
Q-score: 0.51
Li L, Chong T, Peng L, Liu Y, Rao G, Fu Y, Shu Y, Shen J, Xiao Q, Liu J, Li J, Deng F, Yan B, Hu Z, Cao S, Wang M
PLoS Pathog (2024) 20 pp. e1011948-e1011948 [ DOI: doi:10.1371/journal.ppat.1011948 Pubmed: 38300972 ]
- Cchfv envelope protein gc-gc13 complex (Complex from Crimean-Congo hemorrhagic fever virus strain IbAr10200)
- Glycoprotein c,cchfv gc fusion loops (65 kDa, Protein from Crimean-Congo hemorrhagic fever orthonairovirus)
- Mouse antibody gc13 light chain (11 kDa, Protein from Mus musculus)
- Mouse antibody gc13 heavy chain (12 kDa, Protein from Mus musculus)
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (global refinement)
Changrob S, Halfmann PJ, Liu H, Torres JL, McGrath JJC, Ozorowski G, Li L, Wilbanks GD, Kuroda M, Maemura T, Huang M, Zheng NY, Turner HL, Erickson SA, Fu Y, Yasuhara A, Singh G, Monahan B, Mauldin J, Srivastava K, Simon V, Krammer F, Sather DN, Ward AB, Wilson IA, Kawaoka Y, Wilson PC
J Clin Inv (2023) 133 [ DOI: doi:10.1172/JCI166844 Pubmed: 36862518 ]
S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8d0z
Q-score: 0.42
Changrob S, Halfmann PJ, Liu H, Torres JL, McGrath JJC, Ozorowski G, Li L, Wilbanks GD, Kuroda M, Maemura T, Huang M, Zheng NY, Turner HL, Erickson SA, Fu Y, Yasuhara A, Singh G, Monahan B, Mauldin J, Srivastava K, Simon V, Krammer F, Sather DN, Ward AB, Wilson IA, Kawaoka Y, Wilson PC
J Clin Inv (2023) 133 [ DOI: doi:10.1172/JCI166844 Pubmed: 36862518 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S728-1157 fab heavy chain variable region (12 kDa, Protein from Homo sapiens)
- S728-1157 fab light chain variable region (11 kDa, Protein from Homo sapiens)
- S728-1157 igg in complex with sars-cov-2-6p-mut7 s protein (Complex from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of baculovirus LEF-3 in complex with ssDNA
Resolution: 3.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 7ypo
Q-score: 0.467
Yin J, Fu Y, Rao G, Li Z, Tian K, Chong T, Kuang K, Wang M, Hu Z, Cao S
Nucleic Acids Res (2022) 50 pp. 13100-13113 [ Pubmed: 36477586 DOI: doi:10.1093/nar/gkac1142 ]
- Baculovirus lef-3 in complex with ssdna (Complex)
- Lef3 (47 kDa, Protein from Helicoverpa armigera nucleopolyhedrovirus)
- Dna (28-mer) (8 kDa, DNA from synthetic construct)
- Ssdna (Complex)
- Lef-3 (Complex from Helicoverpa armigera nucleopolyhedrovirus)
Cryo-EM structure of one baculovirus LEF-3 molecule in complex with ssDNA
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7ypq
Q-score: 0.549
Yin J, Fu Y, Rao G, Li Z, Tian K, Chong T, Kuang K, Wang M, Hu Z, Cao S
Nucleic Acids Res (2022) 50 pp. 13100-13113 [ Pubmed: 36477586 DOI: doi:10.1093/nar/gkac1142 ]
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (3 kDa, DNA from synthetic construct)
- Baculovirus lef-3 in complex with ssdna (Complex)
- Lef3 (47 kDa, Protein from Helicoverpa armigera nucleopolyhedrovirus)
- Ssdna (Complex)
- Lef-3 (Complex from Helicoverpa armigera nucleopolyhedrovirus)
Cryo-EM structure of CopC-CaM-caspase-3 with NAD+
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7xn4
Q-score: 0.492
Zhang K, Peng T, Tao X, Tian M, Li Y, Wang Z, Ma S, Hu S, Pan X, Xue J, Luo J, Wu Q, Fu Y, Li S
Mol Cell (2022) 82 pp. 4712-4726.e7 [ Pubmed: 36423631 DOI: doi:10.1016/j.molcel.2022.10.032 ]
- Cryo-em structure of copc-cam-caspase-3 with nad+ (Complex from Homo sapiens)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Arginine adp-riboxanase copc (52 kDa, Protein from Chromobacterium violaceum)
- Caspase-3 (31 kDa, Protein from Homo sapiens)
Cryo-EM structure of CopC-CaM-caspase-3 with ADPR
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 7xn5
Q-score: 0.517
Zhang K, Peng T, Tao X, Tian M, Li Y, Wang Z, Ma S, Hu S, Pan X, Xue J, Luo J, Wu Q, Fu Y, Li S
Mol Cell (2022) 82 pp. 4712-4726.e7 [ Pubmed: 36423631 DOI: doi:10.1016/j.molcel.2022.10.032 ]
- Nicotinamide (122 Da, Ligand)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)
- Cryo-em structure of copc-cam-caspase-3 with adpr (Complex from Homo sapiens)
- Arginine adp-riboxanase copc (52 kDa, Protein from Chromobacterium violaceum)
- Caspase-3 (31 kDa, Protein from Homo sapiens)
- Adenosine-5-diphosphoribose (559 Da, Ligand)
Cryo-EM structure of CopC-CaM-caspase-3 with ADPR-deacylization
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 7xn6
Q-score: 0.466
Zhang K, Peng T, Tao X, Tian M, Li Y, Wang Z, Ma S, Hu S, Pan X, Xue J, Luo J, Wu Q, Fu Y, Li S
Mol Cell (2022) 82 pp. 4712-4726.e7 [ Pubmed: 36423631 DOI: doi:10.1016/j.molcel.2022.10.032 ]
- Nicotinamide (122 Da, Ligand)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)
- Caspase-3 (32 kDa, Protein from Homo sapiens)
- Arginine adp-riboxanase copc (52 kDa, Protein from Chromobacterium violaceum)
- Cryo-em structure of copc-cam-caspase-3 with adpr-deacylization (Complex from Homo sapiens)