Cryo-EM structure of CopC-CaM-caspase-3 with NAD+
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7xn4
Q-score: 0.492
Zhang K, Peng T, Tao X, Tian M, Li Y, Wang Z, Ma S, Hu S, Pan X, Xue J, Luo J, Wu Q, Fu Y, Li S
Mol Cell (2022) 82 pp. 4712-4726.e7 [ DOI: doi:10.1016/j.molcel.2022.10.032 Pubmed: 36423631 ]
- Arginine adp-riboxanase copc (52 kDa, Protein from Chromobacterium violaceum)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Cryo-em structure of copc-cam-caspase-3 with nad+ (Complex from Homo sapiens)
- Caspase-3 (31 kDa, Protein from Homo sapiens)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)
Cryo-EM structure of CopC-CaM-caspase-3 with ADPR
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 7xn5
Q-score: 0.517
Zhang K, Peng T, Tao X, Tian M, Li Y, Wang Z, Ma S, Hu S, Pan X, Xue J, Luo J, Wu Q, Fu Y, Li S
Mol Cell (2022) 82 pp. 4712-4726.e7 [ DOI: doi:10.1016/j.molcel.2022.10.032 Pubmed: 36423631 ]
- Arginine adp-riboxanase copc (52 kDa, Protein from Chromobacterium violaceum)
- Nicotinamide (122 Da, Ligand)
- Adenosine-5-diphosphoribose (559 Da, Ligand)
- Caspase-3 (31 kDa, Protein from Homo sapiens)
- Cryo-em structure of copc-cam-caspase-3 with adpr (Complex from Homo sapiens)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)
Cryo-EM structure of CopC-CaM-caspase-3 with ADPR-deacylization
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 7xn6
Q-score: 0.466
Zhang K, Peng T, Tao X, Tian M, Li Y, Wang Z, Ma S, Hu S, Pan X, Xue J, Luo J, Wu Q, Fu Y, Li S
Mol Cell (2022) 82 pp. 4712-4726.e7 [ DOI: doi:10.1016/j.molcel.2022.10.032 Pubmed: 36423631 ]
- Arginine adp-riboxanase copc (52 kDa, Protein from Chromobacterium violaceum)
- Nicotinamide (122 Da, Ligand)
- Caspase-3 (32 kDa, Protein from Homo sapiens)
- Cryo-em structure of copc-cam-caspase-3 with adpr-deacylization (Complex from Homo sapiens)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)
Cryo-EM structure of cortical microtubule from Toxoplasma gondii (with TrxL2)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7miz
Q-score: 0.46
Wang X, Fu Y, Beatty WL, Ma M, Brown A, David Sibley L, Zhang R
Nat Commun (2021) 12 pp. 3065-3065 [ Pubmed: 34031406 DOI: doi:10.1038/s41467-021-23351-1 ]
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Tubulin beta chain (50 kDa, Protein from Toxoplasma gondii)
- Microtubule associated protein spm1 (38 kDa, Protein from Toxoplasma gondii)
- Pdi family protein (24 kDa, Protein from Toxoplasma gondii)
- Cortical microtubule with associated mips (Complex from Toxoplasma gondii)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin alpha chain (50 kDa, Protein from Toxoplasma gondii)
- Pdi family protein (21 kDa, Protein from Toxoplasma gondii)
Cryo-EM structure of cortical microtubule from Toxoplasma gondii (without TrxL2)
Wang X, Fu Y, Beatty WL, Ma M, Brown A, David Sibley L, Zhang R
Nat Commun (2021) 12 pp. 3065-3065 [ Pubmed: 34031406 DOI: doi:10.1038/s41467-021-23351-1 ]
- Cortical microtubule with associated mips (Complex from Toxoplasma gondii)
- Spm1 (Protein from Toxoplasma gondii)
- Beta-tubulin (Protein from Toxoplasma gondii)
- Trxl1 (Protein from Toxoplasma gondii)
- Alpha-tubulin (Protein from Toxoplasma gondii)