Cryo-EM structure of photosynthetic LH1' complex of Roseospirillum parvum
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 8zjw
Q-score: 0.699
Wang XP, Wang GL, Fu Y, Minamino A, Zou MJ, Ma F, Xu B, Wang-Otomo ZY, Kimura Y, Madigan MT, Overmann J, Yu LJ
Commun Biol (2024) 7 pp. 1658-1658 [ DOI: doi:10.1038/s42003-024-07354-4 Pubmed: 39702771 ]
- Beta subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Alpha subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Lh1 prime complex (Complex from Roseospirillum parvum)
- Spirilloxanthin (596 Da, Ligand)
Cryo-EM structure of photosynthetic LH1-RC core complex of Roseospirillum parvum
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8zk2
Q-score: 0.637
Wang XP, Wang GL, Fu Y, Minamino A, Zou MJ, Ma F, Xu B, Wang-Otomo ZY, Kimura Y, Madigan MT, Overmann J, Yu LJ
Commun Biol (2024) 7 pp. 1658-1658 [ DOI: doi:10.1038/s42003-024-07354-4 Pubmed: 39702771 ]
- Beta subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Photosynthetic reaction center h subunit (27 kDa, Protein from Roseospirillum parvum)
- Magnesium ion (24 Da, Ligand)
- Alpha subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Spirilloxanthin (596 Da, Ligand)
- Photosynthetic reaction center cytochrome c subunit (39 kDa, Protein from Roseospirillum parvum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Menaquinone 8 (717 Da, Ligand)
- Reaction center protein l chain (30 kDa, Protein from Roseospirillum parvum)
- Reaction center protein m chain (35 kDa, Protein from Roseospirillum parvum)
- Bacteriopheophytin a (889 Da, Ligand)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Lh1-rc core complex (Complex from Roseospirillum parvum)
- Octadecane (254 Da, Ligand)
- Heme c (618 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
Complex of FMDV O/18074 and inter-serotype broadly neutralizing antibodies pOA-2
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 8y0q
Q-score: 0.621
Li F, Wu S, Lv L, Huang S, Zhang Z, Zerang Z, Li P, Cao Y, Bao H, Sun P, Bai X, He Y, Fu Y, Yuan H, Ma X, Zhao Z, Zhang J, Wang J, Wang T, Li D, Zhang Q, He J, Liu Z, Lu Z, Lei D, Li K
PLoS Pathog (2024) 20 pp. e1012623-e1012623 [ DOI: doi:10.1371/journal.ppat.1012623 Pubmed: 39405339 ]
- Inter-serotype broadly neutralizing antibodies poa-2 (Complex from Sus scrofa)
- Complex of fmdv o/18074 and inter-serotype broadly neutralizing antibodies poa-2 (Complex)
- Vp3 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus O)
- Vp1 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus O)
- Vp4 of capsid protein (8 kDa, Protein from Foot-and-mouth disease virus O)
- Poa2 vl (11 kDa, Protein from Sus scrofa)
- Vp2 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus O)
- Fmdv o/18074 (Complex from Foot-and-mouth disease virus O)
- Poa2 vh (13 kDa, Protein from Sus scrofa)
Complex of FMDV A/WH/CHA/09 and inter-serotype broadly neutralizing antibodies pOA-2
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 8y0r
Q-score: 0.578
Li F, Wu S, Lv L, Huang S, Zhang Z, Zerang Z, Li P, Cao Y, Bao H, Sun P, Bai X, He Y, Fu Y, Yuan H, Ma X, Zhao Z, Zhang J, Wang J, Wang T, Li D, Zhang Q, He J, Liu Z, Lu Z, Lei D, Li K
PLoS Pathog (2024) 20 pp. e1012623-e1012623 [ DOI: doi:10.1371/journal.ppat.1012623 Pubmed: 39405339 ]
- Inter-serotype broadly neutralizing antibodies poa-2 (Complex from Sus scrofa)
- Complex of fmdv a/wh/cha/09 and inter-serotype broadly neutralizing antibodies poa-2 (Complex)
- Vp2 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus A)
- Vp3 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus A)
- Fmdv a/wh/cha/09 (Complex from Foot-and-mouth disease virus A)
- Vp4 of capsid protein (8 kDa, Protein from Foot-and-mouth disease virus A)
- Vp1 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus A)
- Poa2 vl (11 kDa, Protein from Sus scrofa)
- Poa2 vh (13 kDa, Protein from Sus scrofa)
Cryo-EM structure of CopC-CaM-caspase-3 with NAD+
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7xn4
Q-score: 0.492
Zhang K, Peng T, Tao X, Tian M, Li Y, Wang Z, Ma S, Hu S, Pan X, Xue J, Luo J, Wu Q, Fu Y, Li S
Mol Cell (2022) 82 pp. 4712-4726.e7 [ DOI: doi:10.1016/j.molcel.2022.10.032 Pubmed: 36423631 ]
- Arginine adp-riboxanase copc (52 kDa, Protein from Chromobacterium violaceum)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Cryo-em structure of copc-cam-caspase-3 with nad+ (Complex from Homo sapiens)
- Caspase-3 (31 kDa, Protein from Homo sapiens)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)
Cryo-EM structure of CopC-CaM-caspase-3 with ADPR
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 7xn5
Q-score: 0.517
Zhang K, Peng T, Tao X, Tian M, Li Y, Wang Z, Ma S, Hu S, Pan X, Xue J, Luo J, Wu Q, Fu Y, Li S
Mol Cell (2022) 82 pp. 4712-4726.e7 [ DOI: doi:10.1016/j.molcel.2022.10.032 Pubmed: 36423631 ]
- Arginine adp-riboxanase copc (52 kDa, Protein from Chromobacterium violaceum)
- Nicotinamide (122 Da, Ligand)
- Adenosine-5-diphosphoribose (559 Da, Ligand)
- Caspase-3 (31 kDa, Protein from Homo sapiens)
- Cryo-em structure of copc-cam-caspase-3 with adpr (Complex from Homo sapiens)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)
Cryo-EM structure of CopC-CaM-caspase-3 with ADPR-deacylization
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 7xn6
Q-score: 0.466
Zhang K, Peng T, Tao X, Tian M, Li Y, Wang Z, Ma S, Hu S, Pan X, Xue J, Luo J, Wu Q, Fu Y, Li S
Mol Cell (2022) 82 pp. 4712-4726.e7 [ DOI: doi:10.1016/j.molcel.2022.10.032 Pubmed: 36423631 ]
- Arginine adp-riboxanase copc (52 kDa, Protein from Chromobacterium violaceum)
- Nicotinamide (122 Da, Ligand)
- Caspase-3 (32 kDa, Protein from Homo sapiens)
- Cryo-em structure of copc-cam-caspase-3 with adpr-deacylization (Complex from Homo sapiens)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)
FOOT AND MOUTH DISEASE VIRUS O/TIBET/99-BOUND THE SINGLE CHAIN FRAGMEN ANTIBODY C4
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 7eo0
Q-score: 0.404
Li K, He Y, Wang L, Li P, Wang S, Sun P, Bao H, Cao Y, Liu X, Zhu G, Song Y, Bai X, Ma X, Fu Y, Yuan H, Zhang J, Wang J, Chen Y, Li D, Lou Z, Liu Z, Lu Z
J Virol (2021) 95 pp. e0088121-e0088121 [ DOI: doi:10.1128/JVI.00881-21 Pubmed: 34406868 ]
- O/tibet/99 vp2 (24 kDa, Protein from Foot-and-mouth disease virus)
- O/tibet/99 vp4 (8 kDa, Protein from Foot-and-mouth disease virus)
- O/tibet/99 vp1 (23 kDa, Protein from Foot-and-mouth disease virus)
- Foot and mouth disease virus o/tibet/99 (Complex from Foot-and-mouth disease virus)
- O/tibet/99 vp3 (23 kDa, Protein from Foot-and-mouth disease virus)
- Ig heavy chain variable region (13 kDa, Protein from Bos taurus)
- Fmdv-oti-c4 (Complex)
- Ig lamda chain variable region (12 kDa, Protein from Bos taurus)
- C4 scfv (Complex from Bos taurus)
Cryo-EM structure of cortical microtubule from Toxoplasma gondii (with TrxL2)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7miz
Q-score: 0.46
Wang X, Fu Y, Beatty WL, Ma M, Brown A, David Sibley L, Zhang R
Nat Commun (2021) 12 pp. 3065-3065 [ Pubmed: 34031406 DOI: doi:10.1038/s41467-021-23351-1 ]
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Tubulin beta chain (50 kDa, Protein from Toxoplasma gondii)
- Microtubule associated protein spm1 (38 kDa, Protein from Toxoplasma gondii)
- Pdi family protein (24 kDa, Protein from Toxoplasma gondii)
- Cortical microtubule with associated mips (Complex from Toxoplasma gondii)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin alpha chain (50 kDa, Protein from Toxoplasma gondii)
- Pdi family protein (21 kDa, Protein from Toxoplasma gondii)
Cryo-EM structure of cortical microtubule from Toxoplasma gondii (without TrxL2)
Wang X, Fu Y, Beatty WL, Ma M, Brown A, David Sibley L, Zhang R
Nat Commun (2021) 12 pp. 3065-3065 [ Pubmed: 34031406 DOI: doi:10.1038/s41467-021-23351-1 ]
- Cortical microtubule with associated mips (Complex from Toxoplasma gondii)
- Spm1 (Protein from Toxoplasma gondii)
- Beta-tubulin (Protein from Toxoplasma gondii)
- Trxl1 (Protein from Toxoplasma gondii)
- Alpha-tubulin (Protein from Toxoplasma gondii)