cryoEM structure of a broadly neutralizing antibody STI-9167
Atanasoff KE, Brambilla L, Adelsberg DC, Kowdle S, Stevens CS, Slamanig S, Hung C-T, Fu Y, Lim R, Tran L, Allen R, Sun W, Duty JA, Bajic G, Lee B, Tortorella D
Mbio (2024) 15 pp. e0247723-e0247723 [ Pubmed: 38054729 DOI: doi:10.1128/mbio.02477-23 ]
cryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody STI-9167
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8eqf
Q-score: 0.518
Atanasoff KE, Brambilla L, Adelsberg DC, Kowdle S, Stevens CS, Slamanig S, Hung CT, Fu Y, Lim R, Tran L, Allen R, Sun W, Duty JA, Bajic G, Lee B, Tortorella D
Mbio (2024) 15 pp. e0247723-e0247723 [ Pubmed: 38054729 DOI: doi:10.1128/mbio.02477-23 ]
- Sars-cov-2 spike rbd in complex with 10a3 fab (Complex from Homo sapiens)
- Fab heavy chain (13 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Fab light chain (11 kDa, Protein from Homo sapiens)
Cryo-EM structure of cortical microtubule from Toxoplasma gondii (with TrxL2)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7miz
Q-score: 0.46
Wang X, Fu Y, Beatty WL, Ma M, Brown A, David Sibley L, Zhang R
Nat Commun (2021) 12 pp. 3065-3065 [ Pubmed: 34031406 DOI: doi:10.1038/s41467-021-23351-1 ]
- Tubulin alpha chain (50 kDa, Protein from Toxoplasma gondii)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Pdi family protein (21 kDa, Protein from Toxoplasma gondii)
- Cortical microtubule with associated mips (Complex from Toxoplasma gondii)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Pdi family protein (24 kDa, Protein from Toxoplasma gondii)
- Magnesium ion (24 Da, Ligand)
- Microtubule associated protein spm1 (38 kDa, Protein from Toxoplasma gondii)
- Tubulin beta chain (50 kDa, Protein from Toxoplasma gondii)
Cryo-EM structure of cortical microtubule from Toxoplasma gondii (without TrxL2)
Wang X, Fu Y, Beatty WL, Ma M, Brown A, David Sibley L, Zhang R
Nat Commun (2021) 12 pp. 3065-3065 [ Pubmed: 34031406 DOI: doi:10.1038/s41467-021-23351-1 ]
- Beta-tubulin (Protein from Toxoplasma gondii)
- Alpha-tubulin (Protein from Toxoplasma gondii)
- Spm1 (Protein from Toxoplasma gondii)
- Trxl1 (Protein from Toxoplasma gondii)
- Cortical microtubule with associated mips (Complex from Toxoplasma gondii)
Cryo-EM Structure of the Lysosomal Folliculin Complex (FLCN-FNIP2-RagA-RagC-Ragulator)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6nzd
Q-score: 0.326
Lawrence RE, Fromm SA, Fu Y, Yokom AL, Kim DJ, Thelen AM, Young LN, Lim CY, Samelson AJ, Hurley JH, Zoncu R
Science (2019) 366 pp. 971-977 [ Pubmed: 31672913 DOI: doi:10.1126/science.aax0364 ]
- 9-{5-o-[(s)-hydroxy{[(r)-hydroxy(thiophosphonooxy)phosphoryl]oxy}phosphoryl]-alpha-l-arabinofuranosyl}-3,9-dihydro-1h-purine-2,6-dione (540 Da, Ligand)
- Ragulator complex protein lamtor2 (13 kDa, Protein from Homo sapiens)
- Ras-related gtp-binding protein c (44 kDa, Protein from Homo sapiens)
- Ragulator complex protein lamtor1 (18 kDa, Protein from Homo sapiens)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Hepatitis b virus x interacting protein (18 kDa, Protein from Homo sapiens)
- Folliculin (69 kDa, Protein from Homo sapiens)
- Ragulator complex protein lamtor4 (10 kDa, Protein from Homo sapiens)
- Folliculin-interacting protein 2 (122 kDa, Protein from Homo sapiens)
- Ragulator complex protein lamtor3 (13 kDa, Protein from Homo sapiens)
- Flcn-fnip2-raga-ragc-ragulator complex (340 kDa, Complex from Homo sapiens)
- Ras-related gtp-binding protein a (36 kDa, Protein from Homo sapiens)
Cryo-EM Map of the active Ragulator-RagA-RagC Complex
Lawrence RE, Fromm SA, Fu Y, Yokom AL, Kim DJ, Thelen AM, Young LN, Lim CY, Samelson AJ, Hurley JH, Zoncu R
Science (2019) 366 pp. 971-977 [ Pubmed: 31672913 DOI: doi:10.1126/science.aax0364 ]
- Active raga-ragc-ragulator complex (150 kDa, Complex from Homo sapiens)
Su MY, Morris KL, Kim DJ, Fu Y, Lawrence R, Stjepanovic G, Zoncu R, Hurley JH
Mol Cell (2017) 68 pp. 835-846.e3 [ Pubmed: 29107538 DOI: doi:10.1016/j.molcel.2017.10.016 ]
- Raga/ragc:ragulator (150 kDa, Complex from Homo sapiens)