Cryo-EM structure of photosynthetic LH1' complex of Roseospirillum parvum
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 8zjw
Q-score: 0.699
Wang XP, Wang GL, Fu Y, Minamino A, Zou MJ, Ma F, Xu B, Wang-Otomo ZY, Kimura Y, Madigan MT, Overmann J, Yu LJ
Commun Biol (2024) 7 pp. 1658-1658 [ DOI: doi:10.1038/s42003-024-07354-4 Pubmed: 39702771 ]
- Alpha subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Spirilloxanthin (596 Da, Ligand)
- Lh1 prime complex (Complex from Roseospirillum parvum)
- Beta subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
Cryo-EM structure of photosynthetic LH1-RC core complex of Roseospirillum parvum
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8zk2
Q-score: 0.637
Wang XP, Wang GL, Fu Y, Minamino A, Zou MJ, Ma F, Xu B, Wang-Otomo ZY, Kimura Y, Madigan MT, Overmann J, Yu LJ
Commun Biol (2024) 7 pp. 1658-1658 [ DOI: doi:10.1038/s42003-024-07354-4 Pubmed: 39702771 ]
- Alpha subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Photosynthetic reaction center cytochrome c subunit (39 kDa, Protein from Roseospirillum parvum)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Menaquinone 8 (717 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Octadecane (254 Da, Ligand)
- Lh1-rc core complex (Complex from Roseospirillum parvum)
- Photosynthetic reaction center h subunit (27 kDa, Protein from Roseospirillum parvum)
- Bacteriopheophytin a (889 Da, Ligand)
- Reaction center protein l chain (30 kDa, Protein from Roseospirillum parvum)
- Magnesium ion (24 Da, Ligand)
- Spirilloxanthin (596 Da, Ligand)
- Beta subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Heme c (618 Da, Ligand)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Reaction center protein m chain (35 kDa, Protein from Roseospirillum parvum)
Complex of FMDV O/18074 and inter-serotype broadly neutralizing antibodies pOA-2
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 8y0q
Q-score: 0.621
Li F, Wu S, Lv L, Huang S, Zhang Z, Zerang Z, Li P, Cao Y, Bao H, Sun P, Bai X, He Y, Fu Y, Yuan H, Ma X, Zhao Z, Zhang J, Wang J, Wang T, Li D, Zhang Q, He J, Liu Z, Lu Z, Lei D, Li K
PLoS Pathog (2024) 20 pp. e1012623-e1012623 [ DOI: doi:10.1371/journal.ppat.1012623 Pubmed: 39405339 ]
- Fmdv o/18074 (Complex from Foot-and-mouth disease virus O)
- Vp2 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus O)
- Inter-serotype broadly neutralizing antibodies poa-2 (Complex from Sus scrofa)
- Complex of fmdv o/18074 and inter-serotype broadly neutralizing antibodies poa-2 (Complex)
- Poa2 vh (13 kDa, Protein from Sus scrofa)
- Vp3 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus O)
- Vp4 of capsid protein (8 kDa, Protein from Foot-and-mouth disease virus O)
- Poa2 vl (11 kDa, Protein from Sus scrofa)
- Vp1 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus O)
Complex of FMDV A/WH/CHA/09 and inter-serotype broadly neutralizing antibodies pOA-2
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 8y0r
Q-score: 0.578
Li F, Wu S, Lv L, Huang S, Zhang Z, Zerang Z, Li P, Cao Y, Bao H, Sun P, Bai X, He Y, Fu Y, Yuan H, Ma X, Zhao Z, Zhang J, Wang J, Wang T, Li D, Zhang Q, He J, Liu Z, Lu Z, Lei D, Li K
PLoS Pathog (2024) 20 pp. e1012623-e1012623 [ DOI: doi:10.1371/journal.ppat.1012623 Pubmed: 39405339 ]
- Inter-serotype broadly neutralizing antibodies poa-2 (Complex from Sus scrofa)
- Vp4 of capsid protein (8 kDa, Protein from Foot-and-mouth disease virus A)
- Fmdv a/wh/cha/09 (Complex from Foot-and-mouth disease virus A)
- Poa2 vh (13 kDa, Protein from Sus scrofa)
- Vp2 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus A)
- Vp3 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus A)
- Poa2 vl (11 kDa, Protein from Sus scrofa)
- Vp1 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus A)
- Complex of fmdv a/wh/cha/09 and inter-serotype broadly neutralizing antibodies poa-2 (Complex)
Cryo-EM structure of PAO1-ImcA with GMPCPP
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8wcn
Q-score: 0.362
Zhan X, Zhang K, Wang C, Fan Q, Tang X, Zhang X, Wang K, Fu Y, Liang H
Nat Commun (2024) 15 pp. 1860-1860 [ DOI: doi:10.1038/s41467-024-46149-3 Pubmed: 38424057 ]
- Ggdef domain-containing protein (Complex from Pseudomonas aeruginosa)
- Diguanylate cyclase (51 kDa, Protein from Pseudomonas aeruginosa)
- Magnesium ion (24 Da, Ligand)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
Cryo-EM structure of CCHFV envelope protein Gc trimer in complex with Gc13 Fab
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8jkd
Q-score: 0.612
CCHFV envelope protein Gc in complex with Gc8
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8jlw
Q-score: 0.513
Li L, Chong T, Peng L, Liu Y, Rao G, Fu Y, Shu Y, Shen J, Xiao Q, Liu J, Li J, Deng F, Yan B, Hu Z, Cao S, Wang M
PLoS Pathog (2024) 20 pp. e1011948-e1011948 [ DOI: doi:10.1371/journal.ppat.1011948 Pubmed: 38300972 ]
- Mouse antibody gc8 heavy chain (12 kDa, Protein from Mus musculus)
- Glycoprotein c,cchfv envelope protein gc fusion loops (65 kDa, Protein from Crimean-Congo hemorrhagic fever orthonairovirus)
- Mouse antibody gc8 light chain (11 kDa, Protein from Mus musculus)
- Cchfv envelope protein gc-gc8 complex (Complex from Crimean-Congo hemorrhagic fever virus strain IbAr10200)
CCHFV envelope protein Gc in complex with Gc13
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8jlx
Q-score: 0.51
Li L, Chong T, Peng L, Liu Y, Rao G, Fu Y, Shu Y, Shen J, Xiao Q, Liu J, Li J, Deng F, Yan B, Hu Z, Cao S, Wang M
PLoS Pathog (2024) 20 pp. e1011948-e1011948 [ DOI: doi:10.1371/journal.ppat.1011948 Pubmed: 38300972 ]
- Cchfv envelope protein gc-gc13 complex (Complex from Crimean-Congo hemorrhagic fever virus strain IbAr10200)
- Glycoprotein c,cchfv gc fusion loops (65 kDa, Protein from Crimean-Congo hemorrhagic fever orthonairovirus)
- Mouse antibody gc13 light chain (11 kDa, Protein from Mus musculus)
- Mouse antibody gc13 heavy chain (12 kDa, Protein from Mus musculus)
Cryo-EM structure of baculovirus LEF-3 in complex with ssDNA
Resolution: 3.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 7ypo
Q-score: 0.467
Yin J, Fu Y, Rao G, Li Z, Tian K, Chong T, Kuang K, Wang M, Hu Z, Cao S
Nucleic Acids Res (2022) 50 pp. 13100-13113 [ Pubmed: 36477586 DOI: doi:10.1093/nar/gkac1142 ]
- Baculovirus lef-3 in complex with ssdna (Complex)
- Lef3 (47 kDa, Protein from Helicoverpa armigera nucleopolyhedrovirus)
- Dna (28-mer) (8 kDa, DNA from synthetic construct)
- Ssdna (Complex)
- Lef-3 (Complex from Helicoverpa armigera nucleopolyhedrovirus)
Cryo-EM structure of one baculovirus LEF-3 molecule in complex with ssDNA
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7ypq
Q-score: 0.549
Yin J, Fu Y, Rao G, Li Z, Tian K, Chong T, Kuang K, Wang M, Hu Z, Cao S
Nucleic Acids Res (2022) 50 pp. 13100-13113 [ Pubmed: 36477586 DOI: doi:10.1093/nar/gkac1142 ]
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (3 kDa, DNA from synthetic construct)
- Baculovirus lef-3 in complex with ssdna (Complex)
- Lef3 (47 kDa, Protein from Helicoverpa armigera nucleopolyhedrovirus)
- Ssdna (Complex)
- Lef-3 (Complex from Helicoverpa armigera nucleopolyhedrovirus)