Cryo-EM structure of photosynthetic LH1' complex of Roseospirillum parvum
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 8zjw
Q-score: 0.699
Wang XP, Wang GL, Fu Y, Minamino A, Zou MJ, Ma F, Xu B, Wang-Otomo ZY, Kimura Y, Madigan MT, Overmann J, Yu LJ
Commun Biol (2024) 7 pp. 1658-1658 [ DOI: doi:10.1038/s42003-024-07354-4 Pubmed: 39702771 ]
- Alpha subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Spirilloxanthin (596 Da, Ligand)
- Lh1 prime complex (Complex from Roseospirillum parvum)
- Beta subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
Cryo-EM structure of photosynthetic LH1-RC core complex of Roseospirillum parvum
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8zk2
Q-score: 0.637
Wang XP, Wang GL, Fu Y, Minamino A, Zou MJ, Ma F, Xu B, Wang-Otomo ZY, Kimura Y, Madigan MT, Overmann J, Yu LJ
Commun Biol (2024) 7 pp. 1658-1658 [ DOI: doi:10.1038/s42003-024-07354-4 Pubmed: 39702771 ]
- Alpha subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Bacteriochlorophyll a (911 Da, Ligand)
- Photosynthetic reaction center cytochrome c subunit (39 kDa, Protein from Roseospirillum parvum)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Menaquinone 8 (717 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Octadecane (254 Da, Ligand)
- Lh1-rc core complex (Complex from Roseospirillum parvum)
- Photosynthetic reaction center h subunit (27 kDa, Protein from Roseospirillum parvum)
- Bacteriopheophytin a (889 Da, Ligand)
- Reaction center protein l chain (30 kDa, Protein from Roseospirillum parvum)
- Magnesium ion (24 Da, Ligand)
- Spirilloxanthin (596 Da, Ligand)
- Beta subunit of light-harvesting 1 complex (7 kDa, Protein from Roseospirillum parvum)
- Heme c (618 Da, Ligand)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Reaction center protein m chain (35 kDa, Protein from Roseospirillum parvum)
Cryo-EM structure of human HCN3 channel with cAMP
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 8io0
Q-score: 0.42
Cryo-EM Structure of Mouse TLR4/MD-2/DLAM3 Complex
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8wry
Q-score: 0.533
To Be Published
- Toll-like receptor 4 (68 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2-amino-2-deoxy-4-o-phosphono-alpha-d-glucopyranose (259 Da, Ligand)
- (3r)-3-(tetradecanoyloxy)tetradecanoic acid (454 Da, Ligand)
- 2-(hydroxymethyl)-5-methoxy-3,6-bis(oxidanyl)pyran-4-one (188 Da, Ligand)
- Lymphocyte antigen 96 (16 kDa, Protein from Mus musculus)
- Mouse tlr4/md2/dlam3 complex (Complex from Mus musculus)
- (3r)-3-(dodecanoyloxy)tetradecanoic acid (426 Da, Ligand)
Cryo-EM Structure of Mouse TLR4/MD-2/DLAM5 Complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8wsa
Q-score: 0.475
To Be Published
- Toll-like receptor 4 (68 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2-amino-2-deoxy-4-o-phosphono-alpha-d-glucopyranose (259 Da, Ligand)
- [(2~{r},3~{s},4~{r},5~{s})-2-(hydroxymethyl)-5-methoxy-4,6-bis(oxidanyl)oxan-3-yl] dihydrogen phosphate (274 Da, Ligand)
- (3r)-3-(tetradecanoyloxy)tetradecanoic acid (454 Da, Ligand)
- Mouse tlr4/md2/dlam5 complex (Complex from Mus musculus)
- (3~{s})-3-decanoyloxytetradecanoic acid (398 Da, Ligand)
- Lymphocyte antigen 96 (16 kDa, Protein from Mus musculus)
- (3r)-3-(dodecanoyloxy)tetradecanoic acid (426 Da, Ligand)
Cryo-EM Structure of Human TLR4/MD-2/DLAM3 Complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8wta
Q-score: 0.474
To Be Published
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2-amino-2-deoxy-4-o-phosphono-alpha-d-glucopyranose (259 Da, Ligand)
- (3r)-3-(tetradecanoyloxy)tetradecanoic acid (454 Da, Ligand)
- Toll-like receptor 4 (68 kDa, Protein from Homo sapiens)
- 2-(hydroxymethyl)-5-methoxy-3,6-bis(oxidanyl)pyran-4-one (188 Da, Ligand)
- Lymphocyte antigen 96 (16 kDa, Protein from Homo sapiens)
- Human tlr4/md2/dlam3 complex (Complex from Homo sapiens)
- (3r)-3-(dodecanoyloxy)tetradecanoic acid (426 Da, Ligand)
Cryo-EM Structure of Mouse TLR4/MD-2/DLAM1 complex
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8wqt
Q-score: 0.375
To Be Published
- Toll-like receptor 4 (68 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2-amino-2-deoxy-4-o-phosphono-alpha-d-glucopyranose (259 Da, Ligand)
- (3r)-3-(tetradecanoyloxy)tetradecanoic acid (454 Da, Ligand)
- Mouse tlr4/md2/dlam1 complex (Complex from Mus musculus)
- [(2~{r},3~{s},4~{s},5~{s})-5-methoxy-3,4,6-tris(oxidanyl)oxan-2-yl]methyl dihydrogen phosphate (274 Da, Ligand)
- Lymphocyte antigen 96 (16 kDa, Protein from Mus musculus)
- (3r)-3-(dodecanoyloxy)tetradecanoic acid (426 Da, Ligand)
Cryo-EM Structure of Human TLR4/MD-2/DLAM5 Complex
Resolution: 2.24 Å
EM Method: Single-particle
Fitted PDBs: 8wo1
Q-score: 0.587
To Be Published
- Human tlr4/md2/dlam5 complex (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 2-amino-2-deoxy-4-o-phosphono-alpha-d-glucopyranose (259 Da, Ligand)
- [(2~{r},3~{s},4~{r},5~{s})-2-(hydroxymethyl)-5-methoxy-4,6-bis(oxidanyl)oxan-3-yl] dihydrogen phosphate (274 Da, Ligand)
- (3r)-3-(tetradecanoyloxy)tetradecanoic acid (454 Da, Ligand)
- Toll-like receptor 4 (68 kDa, Protein from Homo sapiens)
- Lymphocyte antigen 96 (16 kDa, Protein from Homo sapiens)
- (3~{s})-3-decanoyloxytetradecanoic acid (398 Da, Ligand)
- (3r)-3-(dodecanoyloxy)tetradecanoic acid (426 Da, Ligand)
Complex of FMDV O/18074 and inter-serotype broadly neutralizing antibodies pOA-2
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 8y0q
Q-score: 0.621
Li F, Wu S, Lv L, Huang S, Zhang Z, Zerang Z, Li P, Cao Y, Bao H, Sun P, Bai X, He Y, Fu Y, Yuan H, Ma X, Zhao Z, Zhang J, Wang J, Wang T, Li D, Zhang Q, He J, Liu Z, Lu Z, Lei D, Li K
PLoS Pathog (2024) 20 pp. e1012623-e1012623 [ DOI: doi:10.1371/journal.ppat.1012623 Pubmed: 39405339 ]
- Fmdv o/18074 (Complex from Foot-and-mouth disease virus O)
- Vp2 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus O)
- Inter-serotype broadly neutralizing antibodies poa-2 (Complex from Sus scrofa)
- Complex of fmdv o/18074 and inter-serotype broadly neutralizing antibodies poa-2 (Complex)
- Poa2 vh (13 kDa, Protein from Sus scrofa)
- Vp3 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus O)
- Vp4 of capsid protein (8 kDa, Protein from Foot-and-mouth disease virus O)
- Poa2 vl (11 kDa, Protein from Sus scrofa)
- Vp1 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus O)
Complex of FMDV A/WH/CHA/09 and inter-serotype broadly neutralizing antibodies pOA-2
Resolution: 2.52 Å
EM Method: Single-particle
Fitted PDBs: 8y0r
Q-score: 0.578
Li F, Wu S, Lv L, Huang S, Zhang Z, Zerang Z, Li P, Cao Y, Bao H, Sun P, Bai X, He Y, Fu Y, Yuan H, Ma X, Zhao Z, Zhang J, Wang J, Wang T, Li D, Zhang Q, He J, Liu Z, Lu Z, Lei D, Li K
PLoS Pathog (2024) 20 pp. e1012623-e1012623 [ DOI: doi:10.1371/journal.ppat.1012623 Pubmed: 39405339 ]
- Inter-serotype broadly neutralizing antibodies poa-2 (Complex from Sus scrofa)
- Vp4 of capsid protein (8 kDa, Protein from Foot-and-mouth disease virus A)
- Fmdv a/wh/cha/09 (Complex from Foot-and-mouth disease virus A)
- Poa2 vh (13 kDa, Protein from Sus scrofa)
- Vp2 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus A)
- Vp3 of capsid protein (24 kDa, Protein from Foot-and-mouth disease virus A)
- Poa2 vl (11 kDa, Protein from Sus scrofa)
- Vp1 of capsid protein (23 kDa, Protein from Foot-and-mouth disease virus A)
- Complex of fmdv a/wh/cha/09 and inter-serotype broadly neutralizing antibodies poa-2 (Complex)