Cryo-EM structure of LPA1-Gi complex with LPA
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 9izf
Q-score: 0.487
Suzuki S, Tanaka K, Kamegawa A, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
J Struct Biol (2024) 217 pp. 108164-108164 [ DOI: doi:10.1016/j.jsb.2024.108164 Pubmed: 39725093 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Homo sapiens)
- Soluble cytochrome b562,lysophosphatidic acid receptor 1,lgbit tag (73 kDa, Protein from synthetic construct)
- Multiprotein complex (Complex from Homo sapiens)
- Scfv16 (26 kDa, Protein from synthetic construct)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
Cryo-EM structure of LPA1-Gq complex with LPA
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 9izg
Q-score: 0.557
Suzuki S, Tanaka K, Kamegawa A, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
J Struct Biol (2024) 217 pp. 108164-108164 [ DOI: doi:10.1016/j.jsb.2024.108164 Pubmed: 39725093 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Homo sapiens)
- Soluble cytochrome b562,lysophosphatidic acid receptor 1,lgbit tag (73 kDa, Protein from synthetic construct)
- Multiprotein complex (Complex from Homo sapiens)
- Gs-mini-gq chimera (28 kDa, Protein from Homo sapiens)
- Scfv16 (26 kDa, Protein from synthetic construct)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
Cryo-EM structure of LPA1-G13 complex with LPA
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 9izh
Q-score: 0.553
Suzuki S, Tanaka K, Kamegawa A, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
J Struct Biol (2024) 217 pp. 108164-108164 [ DOI: doi:10.1016/j.jsb.2024.108164 Pubmed: 39725093 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Homo sapiens)
- Soluble cytochrome b562,lysophosphatidic acid receptor 1,lgbit tag (73 kDa, Protein from synthetic construct)
- G protein subunit 13 (gi2-mini-g13 chimera) (26 kDa, Protein from Homo sapiens)
- Multiprotein complex (Complex from Homo sapiens)
- Scfv16 (26 kDa, Protein from synthetic construct)
- (2r)-2-hydroxy-3-(phosphonooxy)propyl (9e)-octadec-9-enoate (436 Da, Ligand)
Cryo-EM structure of HCA2-Gi complex with GSK256073
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 8ihb
Q-score: 0.571
Suzuki S, Tanaka K, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
Nat Commun (2023) 14 pp. 5899-5899 [ DOI: doi:10.1038/s41467-023-41650-7 Pubmed: 37736747 ]
- Soluble cytochrome b562,hydroxycarboxylic acid receptor 2 (74 kDa, Protein from Homo sapiens)
- 8-chloranyl-3-pentyl-7h-purine-2,6-dione (256 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Mus musculus)
- Multiprotein complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
- Scfv16 (26 kDa, Protein from synthetic construct)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
Cryo-EM structure of HCA2-Gi complex with MK6892
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 8ihf
Q-score: 0.537
Suzuki S, Tanaka K, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
Nat Commun (2023) 14 pp. 5899-5899 [ DOI: doi:10.1038/s41467-023-41650-7 Pubmed: 37736747 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
- Soluble cytochrome b562,hydroxycarboxylic acid receptor 2 (74 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Mus musculus)
- 2-[[2,2-dimethyl-3-[3-(5-oxidanylpyridin-2-yl)-1,2,4-oxadiazol-5-yl]propanoyl]amino]cyclohexene-1-carboxylic acid (386 Da, Ligand)
- Multiprotein complex (Complex from Homo sapiens)
- Scfv16 (26 kDa, Protein from synthetic construct)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
Cryo-EM structure of HCA2-Gi complex with LUF6283
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8ihh
Q-score: 0.521
Suzuki S, Tanaka K, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
Nat Commun (2023) 14 pp. 5899-5899 [ DOI: doi:10.1038/s41467-023-41650-7 Pubmed: 37736747 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
- Soluble cytochrome b562,hydroxycarboxylic acid receptor 2 (74 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Mus musculus)
- Multiprotein complex (Complex from Homo sapiens)
- 5-butyl-1~{h}-pyrazole-3-carboxylic acid (168 Da, Ligand)
- Scfv16 (26 kDa, Protein from synthetic construct)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
Cryo-EM structure of HCA2-Gi complex with acifran
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 8ihi
Q-score: 0.523
Suzuki S, Tanaka K, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
Nat Commun (2023) 14 pp. 5899-5899 [ DOI: doi:10.1038/s41467-023-41650-7 Pubmed: 37736747 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
- Soluble cytochrome b562,hydroxycarboxylic acid receptor 2 (74 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Mus musculus)
- (5~{s})-5-methyl-4-oxidanylidene-5-phenyl-furan-2-carboxylic acid (218 Da, Ligand)
- Multiprotein complex (Complex from Homo sapiens)
- Scfv16 (26 kDa, Protein from synthetic construct)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
Cryo-EM structure of HCA3-Gi complex with acifran
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8ihj
Q-score: 0.507
Suzuki S, Tanaka K, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
Nat Commun (2023) 14 pp. 5899-5899 [ DOI: doi:10.1038/s41467-023-41650-7 Pubmed: 37736747 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Mus musculus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Mus musculus)
- (5~{s})-5-methyl-4-oxidanylidene-5-phenyl-furan-2-carboxylic acid (218 Da, Ligand)
- Multiprotein complex (Complex from Homo sapiens)
- Soluble cytochrome b562,hydroxycarboxylic acid receptor 3 (60 kDa, Protein from Homo sapiens)
- Scfv16 (26 kDa, Protein from synthetic construct)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
Cryo-EM structure of HCA3-Gi complex with acifran (local)
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8ihk
Q-score: 0.472
Suzuki S, Tanaka K, Nishikawa K, Suzuki H, Oshima A, Fujiyoshi Y
Nat Commun (2023) 14 pp. 5899-5899 [ DOI: doi:10.1038/s41467-023-41650-7 Pubmed: 37736747 ]
Structure of human alpha-2/delta-1 with mirogabalin
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 8if3
Q-score: 0.447
Kozai D, Numoto N, Nishikawa K, Kamegawa A, Kawasaki S, Hiroaki Y, Irie K, Oshima A, Hanzawa H, Shimada K, Kitano Y, Fujiyoshi Y
J Mol Biol (2023) 435 pp. 168049-168049 [ Pubmed: 36933823 DOI: doi:10.1016/j.jmb.2023.168049 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Voltage-dependent calcium channel subunit alpha-2/delta-1 (140 kDa, Cellular component from Homo sapiens)
- 2-[(1r,5s,6s)-6-(aminomethyl)-3-ethyl-6-bicyclo[3.2.0]hept-3-enyl]acetic acid (209 Da, Ligand)
- Voltage-dependent calcium channel subunit alpha-2/delta-1 (124 kDa, Protein from Homo sapiens)