Structure of monkeypox virus polymerase complex F8-A22-E4-H5 (tag-free A22) with exogenous DNA
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8wpe
Q-score: 0.47
Mol Cell (2023) 83 pp. 4398- [ DOI: doi:10.1016/j.molcel.2023.10.038 Pubmed: 37995690 ]
- F8-a22-e4-h5 (Complex)
- Magnesium ion (24 Da, Ligand)
- Dna (Complex)
- Template dna (14 kDa, DNA from synthetic construct)
- H5r late gene transcription factor (23 kDa, Protein from Monkeypox virus)
- Primer dna (10 kDa, DNA from synthetic construct)
- E4r uracil-dna glycosylase, dna polymerase processivity factor (25 kDa, Protein from Monkeypox virus)
- F8-a22-e4-h5 (tag-free a22) with exogenous dna (Complex from Monkeypox virus)
- A22r dna polymerase processivity factor (49 kDa, Protein from Monkeypox virus)
- 2',3'-dideoxy-thymidine-5'-triphosphate (466 Da, Ligand)
- Dna polymerase (117 kDa, Protein from Monkeypox virus)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8wpf
Q-score: 0.448
Mol Cell (2023) 83 pp. 4398- [ DOI: doi:10.1016/j.molcel.2023.10.038 Pubmed: 37995690 ]
- A22r dna polymerase processivity factor (50 kDa, Protein from Monkeypox virus)
- F8-a22-e4-h5 (Complex)
- Template dna (14 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Dna (Complex)
- H5r late gene transcription factor (23 kDa, Protein from Monkeypox virus)
- Primer dna (10 kDa, DNA from synthetic construct)
- F8-a22-e4-h5 with exogenous dna bearing one abasic site (Complex from Monkeypox virus)
- E4r uracil-dna glycosylase, dna polymerase processivity factor (25 kDa, Protein from Monkeypox virus)
- 2',3'-dideoxy-thymidine-5'-triphosphate (466 Da, Ligand)
- Dna polymerase (117 kDa, Protein from Monkeypox virus)
Structure of monkeypox virus polymerase complex F8-A22-E4-H5 with exgenous DNA
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8wpk
Q-score: 0.512
Mol Cell (2023) 83 pp. 4398- [ DOI: doi:10.1016/j.molcel.2023.10.038 Pubmed: 37995690 ]
- Magnesium ion (24 Da, Ligand)
- Dna (Complex from Homo sapiens)
- Template dna (14 kDa, DNA from synthetic construct)
- H5r late gene transcription factor (23 kDa, Protein from Monkeypox virus)
- Primer dna (10 kDa, DNA from synthetic construct)
- E4r uracil-dna glycosylase, dna polymerase processivity factor (25 kDa, Protein from Monkeypox virus)
- 2',3'-dideoxy-thymidine-5'-triphosphate (466 Da, Ligand)
- Dna polymerase (117 kDa, Protein from Monkeypox virus)
- F8-a22-e4-h5 (Complex from Monkeypox virus)
- Dna polymerase processivity factor (50 kDa, Protein from Monkeypox virus)
- F8-a22-e4-h5 with exogenous dna (Complex)
Structure of monkeypox virus polymerase complex F8-A22-E4-H5 with endogenous DNA
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8wpp
Q-score: 0.41
Mol Cell (2023) 83 pp. 4398- [ DOI: doi:10.1016/j.molcel.2023.10.038 Pubmed: 37995690 ]
- F8-a22-e4-h5 with endogenous dna (Complex)
- A22r dna polymerase processivity factor (50 kDa, Protein from Monkeypox virus)
- Dna (Complex from Homo sapiens)
- Template dna (14 kDa, DNA from Homo sapiens)
- H5r late gene transcription factor (23 kDa, Protein from Monkeypox virus)
- E4r uracil-dna glycosylase, dna polymerase processivity factor (25 kDa, Protein from Monkeypox virus)
- Primer dna (10 kDa, DNA from Homo sapiens)
- Dna polymerase (117 kDa, Protein from Monkeypox virus)
- F8-a22-e4-h5 (Complex from Monkeypox virus)
Photochromobilin-free form of Arabidopsis thaliana phytochrome A - apo-AtphyA
Pr conformer of Zea mays phytochrome A1 - ZmphyA1-Pr
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8isk
Q-score: 0.415
Zhang Y, Lin X, Ma C, Zhao J, Shang X, Wang Z, Xu B, Gao N, Deng XW, Wang J
Cell Res (2023) 33 pp. 806-809 [ Pubmed: 37491602 DOI: doi:10.1038/s41422-023-00858-4 ]
- 3-[5-[[(3~{r},4~{r})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{h}-pyrrol-2-yl]methyl]-4-methyl-1~{h}-pyrrol-3-yl]propanoic acid (586 Da, Ligand)
- Phytochrome (124 kDa, Protein from Zea mays)
- Zea mays phytochrome a1 (zmphya1-pr) (Complex from Arabidopsis thaliana)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8ib2
Q-score: 0.5
Li N, Chen S, Xu K, He MT, Dong MQ, Zhang QC, Gao N
Cell (2023) 186 pp. 1912-1929.e18 [ DOI: doi:10.1016/j.cell.2023.03.017 Pubmed: 37044097 ]
- Actin, cytoplasmic 1 (41 kDa, Protein from Sus scrofa)
- Spectrin-actin junctional complex (Complex from Sus scrofa)
- Dematin actin binding protein (45 kDa, Protein from Sus scrofa)
- Adenosine-5'-diphosphate (427 Da, Ligand)
Structure of 1:1 PAPP-A.ProMBP complex(half map)
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 7y5n
Q-score: 0.476
Zhong Q, Chu H, Wang G, Zhang C, Li R, Guo F, Meng X, Lei X, Zhou Y, Ren R, Tao L, Li N, Gao N, Wei Y, Qiao J, Hang J
Cell Discov (2022) 8 pp. 137-137 [ Pubmed: 36550107 DOI: doi:10.1038/s41421-022-00502-2 ]
- Structure of 1:1 papp-a/prombp complex(half map) (Complex from Homo sapiens)
- Pappalysin-1 (172 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bone marrow proteoglycan (25 kDa, Protein from Homo sapiens)
Structure of 1:1 PAPP-A.STC2 complex(half map)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7y5q
Q-score: 0.438
Zhong Q, Chu H, Wang G, Zhang C, Li R, Guo F, Meng X, Lei X, Zhou Y, Ren R, Tao L, Li N, Gao N, Wei Y, Qiao J, Hang J
Cell Discov (2022) 8 pp. 137-137 [ Pubmed: 36550107 DOI: doi:10.1038/s41421-022-00502-2 ]
- Maltose/maltodextrin-binding periplasmic protein,pappalysin-1 (216 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Structure of 1:1 papp-a/stc2 complex(half map) (Complex from Homo sapiens)
- Stanniocalcin-2 (33 kDa, Protein from Homo sapiens)
Structure of 2:2 PAPP-A.ProMBP comple
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 8hgg
Q-score: 0.408
Zhong Q, Chu H, Wang G, Zhang C, Li R, Guo F, Meng X, Lei X, Zhou Y, Ren R, Tao L, Li N, Gao N, Wei Y, Qiao J, Hang J
Cell Discov (2022) 8 pp. 137-137 [ Pubmed: 36550107 DOI: doi:10.1038/s41421-022-00502-2 ]
- Pappalysin-1 (181 kDa, Protein from Homo sapiens)
- Bone marrow proteoglycan (25 kDa, Protein from Homo sapiens)
- Structure of 2:2 papp-a/prombp complex (Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)