Structure of monkeypox virus polymerase complex F8-A22-E4-H5 (tag-free A22) with exogenous DNA
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8wpe
Q-score: 0.47
Mol Cell (2023) 83 pp. 4398- [ Pubmed: 37995690 DOI: doi:10.1016/j.molcel.2023.10.038 ]
- H5r late gene transcription factor (23 kDa, Protein from Monkeypox virus)
- Dna (Complex)
- Primer dna (10 kDa, DNA from synthetic construct)
- Dna polymerase (117 kDa, Protein from Monkeypox virus)
- A22r dna polymerase processivity factor (49 kDa, Protein from Monkeypox virus)
- Template dna (14 kDa, DNA from synthetic construct)
- F8-a22-e4-h5 (Complex)
- E4r uracil-dna glycosylase, dna polymerase processivity factor (25 kDa, Protein from Monkeypox virus)
- 2',3'-dideoxy-thymidine-5'-triphosphate (466 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- F8-a22-e4-h5 (tag-free a22) with exogenous dna (Complex from Monkeypox virus)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8wpf
Q-score: 0.448
Mol Cell (2023) 83 pp. 4398- [ Pubmed: 37995690 DOI: doi:10.1016/j.molcel.2023.10.038 ]
- H5r late gene transcription factor (23 kDa, Protein from Monkeypox virus)
- Dna (Complex)
- Primer dna (10 kDa, DNA from synthetic construct)
- A22r dna polymerase processivity factor (50 kDa, Protein from Monkeypox virus)
- F8-a22-e4-h5 (Complex)
- E4r uracil-dna glycosylase, dna polymerase processivity factor (25 kDa, Protein from Monkeypox virus)
- 2',3'-dideoxy-thymidine-5'-triphosphate (466 Da, Ligand)
- Template dna (14 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- F8-a22-e4-h5 with exogenous dna bearing one abasic site (Complex from Monkeypox virus)
- Dna polymerase (117 kDa, Protein from Monkeypox virus)
Structure of monkeypox virus polymerase complex F8-A22-E4-H5 with exgenous DNA
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8wpk
Q-score: 0.512
Mol Cell (2023) 83 pp. 4398- [ Pubmed: 37995690 DOI: doi:10.1016/j.molcel.2023.10.038 ]
- H5r late gene transcription factor (23 kDa, Protein from Monkeypox virus)
- F8-a22-e4-h5 with exogenous dna (Complex)
- Primer dna (10 kDa, DNA from synthetic construct)
- F8-a22-e4-h5 (Complex from Monkeypox virus)
- Template dna (14 kDa, DNA from synthetic construct)
- E4r uracil-dna glycosylase, dna polymerase processivity factor (25 kDa, Protein from Monkeypox virus)
- 2',3'-dideoxy-thymidine-5'-triphosphate (466 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna (Complex from Homo sapiens)
- Dna polymerase (117 kDa, Protein from Monkeypox virus)
- Dna polymerase processivity factor (50 kDa, Protein from Monkeypox virus)
Structure of monkeypox virus polymerase complex F8-A22-E4-H5 with endogenous DNA
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8wpp
Q-score: 0.41
Mol Cell (2023) 83 pp. 4398- [ Pubmed: 37995690 DOI: doi:10.1016/j.molcel.2023.10.038 ]
- H5r late gene transcription factor (23 kDa, Protein from Monkeypox virus)
- Template dna (14 kDa, DNA from Homo sapiens)
- Dna polymerase (117 kDa, Protein from Monkeypox virus)
- Primer dna (10 kDa, DNA from Homo sapiens)
- F8-a22-e4-h5 (Complex from Monkeypox virus)
- A22r dna polymerase processivity factor (50 kDa, Protein from Monkeypox virus)
- E4r uracil-dna glycosylase, dna polymerase processivity factor (25 kDa, Protein from Monkeypox virus)
- Dna (Complex from Homo sapiens)
- F8-a22-e4-h5 with endogenous dna (Complex)
Photochromobilin-free form of Arabidopsis thaliana phytochrome A - apo-AtphyA
Pr conformer of Zea mays phytochrome A1 - ZmphyA1-Pr
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8isk
Q-score: 0.415
Zhang Y, Lin X, Ma C, Zhao J, Shang X, Wang Z, Xu B, Gao N, Deng XW, Wang J
Cell Res (2023) 33 pp. 806-809 [ Pubmed: 37491602 DOI: doi:10.1038/s41422-023-00858-4 ]
- Phytochrome (124 kDa, Protein from Zea mays)
- 3-[5-[[(3~{r},4~{r})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{h}-pyrrol-2-yl]methyl]-4-methyl-1~{h}-pyrrol-3-yl]propanoic acid (586 Da, Ligand)
- Zea mays phytochrome a1 (zmphya1-pr) (Complex from Arabidopsis thaliana)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8ib2
Q-score: 0.5
Li N, Chen S, Xu K, He MT, Dong MQ, Zhang QC, Gao N
Cell (2023) 186 pp. 1912-1929.e18 [ Pubmed: 37044097 DOI: doi:10.1016/j.cell.2023.03.017 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Spectrin-actin junctional complex (Complex from Sus scrofa)
- Dematin actin binding protein (45 kDa, Protein from Sus scrofa)
- Actin, cytoplasmic 1 (41 kDa, Protein from Sus scrofa)
Structure of 1:1 PAPP-A.ProMBP complex(half map)
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 7y5n
Q-score: 0.476
Zhong Q, Chu H, Wang G, Zhang C, Li R, Guo F, Meng X, Lei X, Zhou Y, Ren R, Tao L, Li N, Gao N, Wei Y, Qiao J, Hang J
Cell Discov (2022) 8 pp. 137-137 [ Pubmed: 36550107 DOI: doi:10.1038/s41421-022-00502-2 ]
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pappalysin-1 (172 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Structure of 1:1 papp-a/prombp complex(half map) (Complex from Homo sapiens)
- Bone marrow proteoglycan (25 kDa, Protein from Homo sapiens)
Structure of 1:1 PAPP-A.STC2 complex(half map)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7y5q
Q-score: 0.438
Zhong Q, Chu H, Wang G, Zhang C, Li R, Guo F, Meng X, Lei X, Zhou Y, Ren R, Tao L, Li N, Gao N, Wei Y, Qiao J, Hang J
Cell Discov (2022) 8 pp. 137-137 [ Pubmed: 36550107 DOI: doi:10.1038/s41421-022-00502-2 ]
- Maltose/maltodextrin-binding periplasmic protein,pappalysin-1 (216 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Structure of 1:1 papp-a/stc2 complex(half map) (Complex from Homo sapiens)
- Stanniocalcin-2 (33 kDa, Protein from Homo sapiens)
Structure of 2:2 PAPP-A.ProMBP comple
Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 8hgg
Q-score: 0.408
Zhong Q, Chu H, Wang G, Zhang C, Li R, Guo F, Meng X, Lei X, Zhou Y, Ren R, Tao L, Li N, Gao N, Wei Y, Qiao J, Hang J
Cell Discov (2022) 8 pp. 137-137 [ Pubmed: 36550107 DOI: doi:10.1038/s41421-022-00502-2 ]
- Bone marrow proteoglycan (25 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Structure of 2:2 papp-a/prombp complex (Complex from Homo sapiens)
- Pappalysin-1 (181 kDa, Protein from Homo sapiens)