Structure of nucleosome-AAG complex (T-50I, post-catalytic state)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7xfj
Q-score: 0.466
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Complex (Complex)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna-3-methyladenine glycosylase (Complex from Homo sapiens)
- Dna-3-methyladenine glycosylase (32 kDa, Protein from Homo sapiens)
- Nucleosome (Complex from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
Structure of nucleosome-AAG complex (A-55I, post-catalytic state)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7xnp
Q-score: 0.563
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
Structure of nucleosome-DI complex (-30I, Apo state)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7xfc
Q-score: 0.569
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
Structure of nucleosome-AAG complex (A-30I, post-catalytic state)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7xfh
Q-score: 0.515
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna-3-methyladenine glycosylase (Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Complex (Complex)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Dna-3-methyladenine glycosylase (32 kDa, Protein from Homo sapiens)
- Nucleosome (Complex from Xenopus laevis)
Structure of nucleosome-DI complex (-50I, Apo state)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7xfi
Q-score: 0.525
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
Structure of nucleosome-AAG complex (A-53I, free state)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7xfl
Q-score: 0.55
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
Structure of nucleosome-AAG complex (A-53I, post-catalytic state)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7xfm
Q-score: 0.466
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Nucleosome (Complex)
- Dna-3-methyladenine glycosylase (Complex)
- Complex (Complex from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Dna-3-methyladenine glycosylase (32 kDa, Protein from Homo sapiens)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
Structure of nucleosome-DI complex (-55I, Apo state)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7xfn
Q-score: 0.55
Cell Discov (2023) 9 pp. 62-62 [ DOI: doi:10.1038/s41421-023-00560-0 Pubmed: 37339965 ]
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Complex (Complex from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Dna (152-mer) (46 kDa, DNA from Xenopus laevis)
- Dna (152-mer) (47 kDa, DNA from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
Structure of 1:1 PAPP-A.ProMBP complex(half map)
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 7y5n
Q-score: 0.476
Zhong Q, Chu H, Wang G, Zhang C, Li R, Guo F, Meng X, Lei X, Zhou Y, Ren R, Tao L, Li N, Gao N, Wei Y, Qiao J, Hang J
Cell Discov (2022) 8 pp. 137-137 [ Pubmed: 36550107 DOI: doi:10.1038/s41421-022-00502-2 ]
- Structure of 1:1 papp-a/prombp complex(half map) (Complex from Homo sapiens)
- Pappalysin-1 (172 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bone marrow proteoglycan (25 kDa, Protein from Homo sapiens)
Structure of 1:1 PAPP-A.STC2 complex(half map)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7y5q
Q-score: 0.438
Zhong Q, Chu H, Wang G, Zhang C, Li R, Guo F, Meng X, Lei X, Zhou Y, Ren R, Tao L, Li N, Gao N, Wei Y, Qiao J, Hang J
Cell Discov (2022) 8 pp. 137-137 [ Pubmed: 36550107 DOI: doi:10.1038/s41421-022-00502-2 ]
- Maltose/maltodextrin-binding periplasmic protein,pappalysin-1 (216 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Structure of 1:1 papp-a/stc2 complex(half map) (Complex from Homo sapiens)
- Stanniocalcin-2 (33 kDa, Protein from Homo sapiens)