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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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author:"Gao N" AND citation_journal_name:"NATURE" AND xref_links:"pdb" AND author_name:"D"

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EMD-38317

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Structure of yeast replisome associated with FACT and histone hexamer, Composite map

Release date: Feb. 14, 2024
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8xgc
Q-score: 0.407

Li N, Gao Y, Zhang Y, Yu D, Lin J, Feng J, Li J, Xu Z, Zhang Y, Dang S, Zhou K, Liu Y, Li XD, Tye BK, Li Q, Gao N, Zhai Y

Nature (2024) 627 pp. 890-897 [ DOI: doi:10.1038/s41586-024-07152-2 Pubmed: 38448592 ]

Sample:

Dna polymerase epsilon catalytic subunit a (255 kDa, Protein from Saccharomyces cerevisiae)
Histone h2b.2 (14 kDa, Protein from Saccharomyces cerevisiae)
Dna (51-mer) (15 kDa, DNA from Saccharomyces cerevisiae)
Topoisomerase 1-associated factor 1 (141 kDa, Protein from Saccharomyces cerevisiae)
Adenosine-5'-diphosphate (427 Da, Ligand)
Dna polymerase alpha-binding protein (104 kDa, Protein from Saccharomyces cerevisiae)
Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae)
Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae)
Dna polymerase epsilon subunit b (78 kDa, Protein from Saccharomyces cerevisiae)
Mediator of replication checkpoint protein 1 (124 kDa, Protein from Saccharomyces cerevisiae)
Histone h4 (11 kDa, Protein from Saccharomyces cerevisiae)
Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae)
Minichromosome maintenance protein 5 (86 kDa, Protein from Saccharomyces cerevisiae)
Chromosome segregation in meiosis protein 3 (36 kDa, Protein from Saccharomyces cerevisiae)
Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae)
Endogenous replisomes (Complex from Saccharomyces cerevisiae)
Histone h3 (15 kDa, Protein from Saccharomyces cerevisiae)
Zinc ion (65 Da, Ligand)
Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae)
Dna replication complex gins protein psf2 (29 kDa, Protein from Saccharomyces cerevisiae)
Histone h2a.1 (14 kDa, Protein from Saccharomyces cerevisiae)
Fact complex subunit spt16 (118 kDa, Protein from Saccharomyces cerevisiae)
Dna replication complex gins protein sld5 (33 kDa, Protein from Saccharomyces cerevisiae)
Dna replication complex gins protein psf1 (24 kDa, Protein from Saccharomyces cerevisiae)
Dna replication complex gins protein psf3 (21 kDa, Protein from Saccharomyces cerevisiae)
Fact complex subunit pob3 (63 kDa, Protein from Saccharomyces cerevisiae)
Dna (39-mer) (11 kDa, DNA from Saccharomyces cerevisiae)
Cell division control protein 45 (74 kDa, Protein from Saccharomyces cerevisiae)

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EMD-9895

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Structure of human T cell receptor-CD3 complex

Release date: Sept. 11, 2019
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6jxr
Q-score: 0.43

Zheng L, Lin J, Zhang B, Zhu Y, Li N, Xie S, Wang Y, Gao N, Huang Z

Nature (2019) 573 pp. 546-552 [ Pubmed: 31461748 DOI: doi:10.1038/s41586-019-1537-0 ]

Sample:

T-cell surface glycoprotein cd3 epsilon chain (23 kDa, Protein from Homo sapiens)
T-cell surface glycoprotein cd3 gamma chain (20 kDa, Protein from Homo sapiens)
T-cell surface glycoprotein cd3 zeta chain (18 kDa, Protein from Homo sapiens)
Complex (Complex from Homo sapiens)
T cell receptor alpha variable 12-3,possible j 11 gene segment,t cell receptor alpha constant (28 kDa, Protein from Homo sapiens)
T cell receptor beta variable 6-5,m1-specific t cell receptor beta chain,t cell receptor beta constant 2 (32 kDa, Protein from Homo sapiens)
T-cell surface glycoprotein cd3 delta chain (18 kDa, Protein from Homo sapiens)

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EMD-6667

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Mechanistic insights into the alternative translation termination by ArfA and RF2

Release date: Jan. 25, 2017
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 5h5u
Q-score: 0.538

Ma C, Kurita D, Li N, Chen Y, Himeno H, Gao N

Nature (2017) 541 pp. 550-553 [ DOI: doi:10.1038/nature20822 Pubmed: 27906160 ]

Sample:

50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli K-12)
5s ribosomal rna (38 kDa, RNA from Escherichia coli K-12)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s3 (25 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
Peptide chain release factor 2 (41 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
Alternative ribosome-rescue factor a (8 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli K-12)
16s rrna (497 kDa, RNA from Escherichia coli K-12)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli K-12)
23s rrna (941 kDa, RNA from Escherichia coli K-12)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s18 (8 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
70s-arfa-rf2 complex (Complex from Escherichia coli)
Mrna (1 kDa, RNA from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli K-12)
Rf2-arfa (Complex)
30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli K-12)
P-site trna (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s7 (19 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli K-12)
Rrna (Complex)

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EMD-6615

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State 1 of cryo-EM structure of the yeast pre-60S particles isolated with Nog2-TAP

Release date: June 1, 2016
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 3jct
Q-score: 0.468

Wu S, Tutunchuoglu B, Yan K, Brown H, Zhang YX, Tan D, Gamalinda M, Yuan Y, Li ZF, Jakovljevic J, Ma CY, Lei JL, Dong M-Q, Woolford J, Gao N

Nature (2016) 534 pp. 133-137 [ Pubmed: 27251291 DOI: doi:10.1038/nature17942 ]

Sample:

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

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Select database:

EMDB [4]

Format:

Select the script type:

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Preview first 10

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