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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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author:"Gao N" AND sample_type:"complex" AND author_name:"Ge"

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EMD-30211

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State 4 of Pre50SH ribosome from RrmJ knock out strain

Release date: July 1, 2020
Resolution: 11.1 Å
EM Method: Single-particle

Wang W, Li WQ, Ge XL, Yan KG, Mandava CS, Sanyal S, Gao N

To Be Published

Sample:

State 4 of pre50sh ribosome (1 MDa, Complex from Escherichia coli)

EMD-30212

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State 3 of pre50SH ribosome from rrmj knock out E.coli strain

Release date: July 1, 2020
Resolution: 3.2 Å
EM Method: Single-particle

Wang W, Li W, Ge X, Yan K, Mandava CS, Sanyal S, Gao N

PNAS (2020) 117 pp. 15609-15619 [ Pubmed: 32571953 DOI: doi:10.1073/pnas.1914323117 ]

Sample:

State 3 of pre50sh ribosome (1 MDa, Complex from Escherichia coli)

EMD-30213

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State 2 of pre50SH ribosome from RrmJ knock out E.coli stain

Release date: July 1, 2020
Resolution: 3.26 Å
EM Method: Single-particle

Wang W, Li W, Ge X, Yan K, Mandava CS, Sanyal S, Gao N

PNAS (2020) 117 pp. 15609-15619 [ Pubmed: 32571953 DOI: doi:10.1073/pnas.1914323117 ]

Sample:

State 2 of pre50sh ribosome (1 MDa, Complex from Escherichia coli)

EMD-30214

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State 1 of pre50SH ribosome from RrmJ knock out E.coli stain

Release date: July 1, 2020
Resolution: 3.64 Å
EM Method: Single-particle

Wang W, Li W, Ge X, Yan K, Mandava CS, Sanyal S, Gao N

PNAS (2020) 117 pp. 15609-15619 [ Pubmed: 32571953 DOI: doi:10.1073/pnas.1914323117 ]

Sample:

State 1 of pre50sh ribosome (1 MDa, Complex from Escherichia coli)

EMD-30215

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Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Release date: July 1, 2020
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 7bv8
Q-score: 0.51

Wang W, Li W, Ge X, Yan K, Mandava CS, Sanyal S, Gao N

PNAS (2020) 117 pp. 15609-15619 [ Pubmed: 32571953 DOI: doi:10.1073/pnas.1914323117 ]

Sample:

50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli (strain K12))
Mature 50s ribosomal subunit from rrmj knock out e.coli strain (1 MDa, Complex from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli (strain K12))
5s rrna (38 kDa, RNA from Escherichia coli (strain K12))
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli (strain K12))
23s rrna (941 kDa, RNA from Escherichia coli (strain K12))
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli (strain K12))

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EMD-6805

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Cryo-EM structure of MscS channel, YnaI

Release date: March 20, 2019
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5y4o
Q-score: 0.331

Yu J, Zhang B, Zhang Y, Xu CQ, Zhuo W, Ge J, Li J, Gao N, Li Y, Yang M

Protein Cell (2018) 9 pp. 629-639 [ Pubmed: 28921397 DOI: doi:10.1007/s13238-017-0465-8 ]

Sample:

Ynai (Complex from Escherichia coli O157:H7)
Low conductance mechanosensitive channel ynai (39 kDa, Protein from Escherichia coli O157:H7)

EMD-6789

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Large subunit of Mycobacterium smegmatis

Release date: Sept. 27, 2017
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 5xym
Q-score: 0.518

Li Z, Ge X, Zhang Y, Zheng L, Sanyal S, Gao N

Protein Cell (2018) 9 pp. 384-388 [ DOI: doi:10.1007/s13238-017-0456-9 Pubmed: 28875450 ]

Sample:

50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l27 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l22 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
Uncharacterized protein bl37 (2 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
Large subunit of mycobacterium smegmatis ribosome (Complex from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
5s rna (38 kDa, RNA from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l17 (21 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l28 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l33 2 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
23s rna (1 MDa, RNA from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l23 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))

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EMD-6790

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Small subunit of Mycobacterium smegmatis ribosome

Release date: Sept. 27, 2017
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 5xyu
Q-score: 0.482

Li Z, Ge X, Zhang Y, Zheng L, Sanyal S, Gao N

Protein Cell (2018) 9 pp. 384-388 [ DOI: doi:10.1007/s13238-017-0456-9 Pubmed: 28875450 ]

Sample:

30s ribosomal protein s7 (17 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s19 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s17 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
Conserved domain protein (4 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s5 (21 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s16 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s8 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
Small subunit of mycobacterium smegmatis ribosome (Complex from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s20 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s15 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s18 2 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s13 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s3 (30 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
Magnesium ion (24 Da, Ligand)
16s rna (495 kDa, RNA from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s9 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s6 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s12 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s4 (23 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s14 type z (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s11 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
30s ribosomal protein s10 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))

[Show more]

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Showing 1 - 8 of 8. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [8]

Format:

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Shell (Unix-based) Batch (Windows-based)

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