SARS-CoV-2 Spike in complex with neutralizing Fab SARS2-38 (three down conformation)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7mkl
Q-score: 0.228
VanBlargan LA, Adams LJ, Liu Z, Chen RE, Gilchuk P, Raju S, Smith BK, Zhao H, Case JB, Winkler ES, Whitener BM, Droit L, Aziati ID, Bricker TL, Joshi A, Shi PY, Creanga A, Pegu A, Handley SA, Wang D, Boon ACM, Crowe Jr JE, Whelan SPJ, Fremont DH, Diamond MS
Immunity (2021) 54 pp. 2399-2416.e6 [ DOI: doi:10.1016/j.immuni.2021.08.016 Pubmed: 34481543 ]
- Spike glycoprotein (124 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars2-38 fv heavy chain (12 kDa, Protein from Mus musculus)
- Sars2-38 fv light chain (11 kDa, Protein from Mus musculus)
- Sars-cov-2 spike bound by sars2-38 antibody fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
SARS-CoV-2 Spike RBD in complex with neutralizing Fab SARS2-38 (local refinement)
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 7mkm
Q-score: 0.3
VanBlargan LA, Adams LJ, Liu Z, Chen RE, Gilchuk P, Raju S, Smith BK, Zhao H, Case JB, Winkler ES, Whitener BM, Droit L, Aziati ID, Bricker TL, Joshi A, Shi PY, Creanga A, Pegu A, Handley SA, Wang D, Boon ACM, Crowe Jr JE, Whelan SPJ, Fremont DH, Diamond MS
Immunity (2021) 54 pp. 2399-2416.e6 [ DOI: doi:10.1016/j.immuni.2021.08.016 Pubmed: 34481543 ]
- Sars2-38 fv heavy chain (12 kDa, Protein from Mus musculus)
- Sars2-38 fv light chain (11 kDa, Protein from Mus musculus)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike bound by sars2-38 antibody fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-43 and ADI-15878
Resolution: 4.16 Å
EM Method: Single-particle
Fitted PDBs: 7kew
Q-score: 0.268
Murin CD, Gilchuk P, Ilinykh PA, Huang K, Kuzmina N, Shen X, Bruhn JF, Bryan AL, Davidson E, Doranz BJ, Williamson LE, Copps J, Alkutkar T, Flyak AI, Bukreyev A, Crowe Jr JE, Ward AB
Cell Rep (2021) 35 pp. 108984-108984 [ Pubmed: 33852862 DOI: doi:10.1016/j.celrep.2021.108984 ]
- Envelope glycoprotein 2 (19 kDa, Protein from Bundibugyo ebolavirus)
- Bdbv-43 fab (Complex from Homo sapiens)
- Bdbv-43 fab light chain (25 kDa, Protein from Homo sapiens)
- Bdbv-43 fab heavy chain (26 kDa, Protein from Homo sapiens)
- Spike glycoprotein 1 (38 kDa, Protein from Bundibugyo ebolavirus)
- Complex of bundibugyo virus gp (mucin deleted) bound to the antibody fab bdbv-43 and adi-15878 (Complex from Bundibugyo ebolavirus)
- Bundibugyo virus gp (mucin deleted) (Complex from Bundibugyo ebolavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-293
Resolution: 4.25 Å
EM Method: Single-particle
Fitted PDBs: 7kex
Q-score: 0.256
Murin CD, Gilchuk P, Ilinykh PA, Huang K, Kuzmina N, Shen X, Bruhn JF, Bryan AL, Davidson E, Doranz BJ, Williamson LE, Copps J, Alkutkar T, Flyak AI, Bukreyev A, Crowe Jr JE, Ward AB
Cell Rep (2021) 35 pp. 108984-108984 [ Pubmed: 33852862 DOI: doi:10.1016/j.celrep.2021.108984 ]
- Antibody fab ebov-293 heavy chain (26 kDa, Protein from Homo sapiens)
- Virion spike glycoprotein 2 (22 kDa, Protein from Ebola virus)
- Ebola virus gp (mucin deleted, makona strain) (Complex from Ebola virus)
- Antibody fab ebov-293 light chain (25 kDa, Protein from Homo sapiens)
- Virion spike glycoprotein 1 (34 kDa, Protein from Ebola virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Complex of ebola virus gp (mucin deleted, makona strain) bound to the antibody fab ebov-293 and ebov-515 (Complex from Homo sapiens)
- Ebov-293 fab (Complex from Homo sapiens)
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-296 and EBOV-515
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7kf9
Q-score: 0.251
Murin CD, Gilchuk P, Ilinykh PA, Huang K, Kuzmina N, Shen X, Bruhn JF, Bryan AL, Davidson E, Doranz BJ, Williamson LE, Copps J, Alkutkar T, Flyak AI, Bukreyev A, Crowe Jr JE, Ward AB
Cell Rep (2021) 35 pp. 108984-108984 [ Pubmed: 33852862 DOI: doi:10.1016/j.celrep.2021.108984 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Virion spike glycoprotein 2 (22 kDa, Protein from Ebola virus)
- Ebola virus gp (mucin deleted, makona strain) (Complex from Ebola virus)
- Ebola virus gp (mucin deleted, makona strain) bound to antibody fab ebov-296 and ebov-515 (Complex from Ebola virus)
- Antibody fab ebov-296 light chain (24 kDa, Protein from Homo sapiens)
- Antibody fab ebov-296 heavy chain (27 kDa, Protein from Homo sapiens)
- Virion spike glycoprotein 1 (34 kDa, Protein from Ebola virus)
- Ebov-296 fab (Complex from Homo sapiens)
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-442 and EBOV-515
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7kfb
Q-score: 0.409
Murin CD, Gilchuk P, Ilinykh PA, Huang K, Kuzmina N, Shen X, Bruhn JF, Bryan AL, Davidson E, Doranz BJ, Williamson LE, Copps J, Alkutkar T, Flyak AI, Bukreyev A, Crowe Jr JE, Ward AB
Cell Rep (2021) 35 pp. 108984-108984 [ Pubmed: 33852862 DOI: doi:10.1016/j.celrep.2021.108984 ]
- Antibody fab ebov-442 (Complex from Homo sapiens)
- Virion spike glycoprotein 2 (22 kDa, Protein from Ebola virus)
- Ebola virus gp (mucin deleted, makona strain) (Complex from Ebola virus)
- Antibody fab ebov-442 heavy chain (25 kDa, Protein from Homo sapiens)
- Virion spike glycoprotein 1 (34 kDa, Protein from Ebola virus)
- Ebola virus gp (mucin deleted, makona strain) bound to antibody fab ebov-442 and ebov-515 (Complex from Ebola virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Antibody fab ebov-442 light chain (23 kDa, Protein from Homo sapiens)
Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-329 and EBOV-515
Resolution: 6.6 Å
EM Method: Single-particle
Fitted PDBs: 7kfe
Q-score: 0.171
Murin CD, Gilchuk P, Ilinykh PA, Huang K, Kuzmina N, Shen X, Bruhn JF, Bryan AL, Davidson E, Doranz BJ, Williamson LE, Copps J, Alkutkar T, Flyak AI, Bukreyev A, Crowe Jr JE, Ward AB
Cell Rep (2021) 35 pp. 108984-108984 [ Pubmed: 33852862 DOI: doi:10.1016/j.celrep.2021.108984 ]
- Envelope glycoprotein 2 (19 kDa, Protein from Bundibugyo ebolavirus)
- Antibody bdbv-329 light chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein 1 (38 kDa, Protein from Bundibugyo ebolavirus)
- Antibody fab bdbv-329 (Complex from Homo sapiens)
- Antibody bdbv-329 heavy chain (25 kDa, Protein from Homo sapiens)
- Bundibugyo virus gp (mucin deleted) (Complex from Bundibugyo ebolavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bundibugyo virus gp (mucin deleted) bound to antibody fab ebov-329 and ebov-515 (Complex from Bundibugyo ebolavirus)
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-237 and EBOV-515
Murin CD, Gilchuk P, Ilinykh PA, Huang K, Kuzmina N, Shen X, Bruhn JF, Bryan AL, Davidson E, Doranz BJ, Williamson LE, Copps J, Alkutkar T, Flyak AI, Bukreyev A, Crowe Jr JE, Ward AB
Cell Rep (2021) 35 pp. 108984-108984 [ Pubmed: 33852862 DOI: doi:10.1016/j.celrep.2021.108984 ]
- Ebola virus gp1 (mucin deleted, makona strain) (Protein from Ebola virus)
- Ebola virus gp (mucin deleted, makona strain) bound to antibody fab ebov-237 and ebov-515 (Complex from Ebola virus)
- Ebola virus gp (mucin deleted, makona strain) (Complex from Ebola virus)
- Ebola virus gp2 (makona strain) (Protein from Ebola virus)
- Antibody fab ebov-237 light chain (Protein from Homo sapiens)
- Antibody fab ebov-237 (Complex from Homo sapiens)
- Antibody fab ebov-237 heavy chain (Protein from Homo sapiens)
EBOV GPdMuc (Makona) in complex with rEBOV-520 and rEBOV-548 Fabs
Resolution: 4.12 Å
EM Method: Single-particle
Fitted PDBs: 6pci
Q-score: 0.38
Gilchuk P, Murin CD, Milligan JC, Cross RW, Mire CE, Ilinykh PA, Huang K, Kuzmina N, Altman PX, Hui S, Gunn BM, Bryan AL, Davidson E, Doranz BJ, Turner HL, Alkutkar T, Flinko R, Orlandi C, Carnahan R, Nargi R, Bombardi RG, Vodzak ME, Li S, Okoli A, Ibeawuchi M, Ohiaeri B, Lewis GK, Alter G, Bukreyev A, Saphire EO, Geisbert TW, Ward AB, Crowe Jr JE
Immunity (2020) 52 pp. 388-403.e12 [ DOI: doi:10.1016/j.immuni.2020.01.001 Pubmed: 32023489 ]
- Rebov-548 fab (Complex)
- Rebov-520 fab light chain (23 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Virion spike glycoprotein (31 kDa, Protein from Ebola virus)
- Ebola virus (makona) gp (Complex)
- Rebov-548 fab light chain (23 kDa, Protein from Homo sapiens)
- Rebov-520 fab (Complex)
- Virion spike glycoprotein,virion spike glycoprotein,ebola virus (makona) gp2 (22 kDa, Protein from Ebola virus)
- Rebov-520 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Ebov gpdmuc (makona) in complex with rebov-520 and rebov-548 fabs (450 kDa, Complex from Homo sapiens)
- Rebov-548 fab heavy chain (25 kDa, Protein from Homo sapiens)