Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes
Resolution: 7.1 Å
EM Method: Single-particle
Fitted PDBs: 8qo2
Q-score: 0.154
de Moura TR, Purta E, Bernat A, Martin-Cuevas EM, Kurkowska M, Baulin EF, Mukherjee S, Nowak J, Biela AP, Rawski M, Glatt S, Moreno-Herrero F, Bujnicki JM
Nucleic Acids Res (2024) 52 pp. 3419-3432 [ Pubmed: 38426934 DOI: doi:10.1093/nar/gkae144 ]
- Oc43-cov-sl5 (71 kDa, RNA from Human coronavirus OC43)
- Human coronavirus oc43 (Virus from Human coronavirus OC43)
Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes
Resolution: 6.6 Å
EM Method: Single-particle
Fitted PDBs: 8qo3
Q-score: 0.131
de Moura TR, Purta E, Bernat A, Martin-Cuevas EM, Kurkowska M, Baulin EF, Mukherjee S, Nowak J, Biela AP, Rawski M, Glatt S, Moreno-Herrero F, Bujnicki JM
Nucleic Acids Res (2024) 52 pp. 3419-3432 [ Pubmed: 38426934 DOI: doi:10.1093/nar/gkae144 ]
Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes
Resolution: 5.9 Å
EM Method: Single-particle
Fitted PDBs: 8qo4
Q-score: 0.148
de Moura TR, Purta E, Bernat A, Martin-Cuevas EM, Kurkowska M, Baulin EF, Mukherjee S, Nowak J, Biela AP, Rawski M, Glatt S, Moreno-Herrero F, Bujnicki JM
Nucleic Acids Res (2024) 52 pp. 3419-3432 [ Pubmed: 38426934 DOI: doi:10.1093/nar/gkae144 ]
Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 8qo5
Q-score: 0.138
de Moura TR, Purta E, Bernat A, Martin-Cuevas EM, Kurkowska M, Baulin EF, Mukherjee S, Nowak J, Biela AP, Rawski M, Glatt S, Moreno-Herrero F, Bujnicki JM
Nucleic Acids Res (2024) 52 pp. 3419-3432 [ Pubmed: 38426934 DOI: doi:10.1093/nar/gkae144 ]
Cryo-EM structure of yeast Elongator complex
Resolution: 4.35 Å
EM Method: Single-particle
Fitted PDBs: 8asv
Q-score: 0.372
Jaciuk M, Scherf D, Kaszuba K, Gaik M, Rau A, Koscielniak A, Krutyholowa R, Rawski M, Indyka P, Graziadei A, Chramiec-Glabik A, Biela A, Dobosz D, Lin TY, Abbassi NE, Hammermeister A, Rappsilber J, Kosinski J, Schaffrath R, Glatt S
Nucleic Acids Res (2023) 51 pp. 2011-2032 [ DOI: doi:10.1093/nar/gkac1232 Pubmed: 36617428 ]
- Elongator complex protein 3 (63 kDa, Protein from Saccharomyces cerevisiae)
- Elongator complex protein 5 (35 kDa, Protein from Saccharomyces cerevisiae)
- Elongator complex protein 6 (30 kDa, Protein from Saccharomyces cerevisiae)
- Elongator complex protein 1 (153 kDa, Protein from Saccharomyces cerevisiae)
- Iron/sulfur cluster (351 Da, Ligand)
- Elongator complex protein 2 (89 kDa, Protein from Saccharomyces cerevisiae)
- Yeast elongator complex (845 kDa, Complex from Saccharomyces cerevisiae)
- Elongator complex protein 4 (51 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of yeast Elp123 in complex with alanine tRNA
Resolution: 3.96 Å
EM Method: Single-particle
Fitted PDBs: 8asw
Q-score: 0.403
Jaciuk M, Scherf D, Kaszuba K, Gaik M, Rau A, Koscielniak A, Krutyholowa R, Rawski M, Indyka P, Graziadei A, Chramiec-Glabik A, Biela A, Dobosz D, Lin TY, Abbassi NE, Hammermeister A, Rappsilber J, Kosinski J, Schaffrath R, Glatt S
Nucleic Acids Res (2023) 51 pp. 2011-2032 [ DOI: doi:10.1093/nar/gkac1232 Pubmed: 36617428 ]
- 5'-deoxyadenosine (251 Da, Ligand)
- Yeast elp123 in complex with alanine trna (636 kDa, Complex from Saccharomyces cerevisiae)
- Elongator complex protein 1 (153 kDa, Protein from Saccharomyces cerevisiae)
- Iron/sulfur cluster (351 Da, Ligand)
- Elongator complex protein 2 (89 kDa, Protein from Saccharomyces cerevisiae)
- Elongator complex protein 3 (63 kDa, Protein from Saccharomyces cerevisiae)
- Alanine trna (23 kDa, RNA from Saccharomyces cerevisiae)
Cryo-EM structure of yeast Elp456 subcomplex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8at6
Q-score: 0.456
Jaciuk M, Scherf D, Kaszuba K, Gaik M, Rau A, Koscielniak A, Krutyholowa R, Rawski M, Indyka P, Graziadei A, Chramiec-Glabik A, Biela A, Dobosz D, Lin TY, Abbassi NE, Hammermeister A, Rappsilber J, Kosinski J, Schaffrath R, Glatt S
Nucleic Acids Res (2023) 51 pp. 2011-2032 [ DOI: doi:10.1093/nar/gkac1232 Pubmed: 36617428 ]
- Elongator complex protein 6 (30 kDa, Protein from Saccharomyces cerevisiae)
- Elongator complex protein 5 (35 kDa, Protein from Saccharomyces cerevisiae)
- Yeast elp456 subcomplex (233 kDa, Complex from Saccharomyces cerevisiae)
- Elongator complex protein 4 (51 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of mouse Elp123 with bound SAM
Resolution: 4.01 Å
EM Method: Single-particle
Fitted PDBs: 8avg
Q-score: 0.423
Jaciuk M, Scherf D, Kaszuba K, Gaik M, Rau A, Koscielniak A, Krutyholowa R, Rawski M, Indyka P, Graziadei A, Chramiec-Glabik A, Biela A, Dobosz D, Lin TY, Abbassi NE, Hammermeister A, Rappsilber J, Kosinski J, Schaffrath R, Glatt S
Nucleic Acids Res (2023) 51 pp. 2011-2032 [ DOI: doi:10.1093/nar/gkac1232 Pubmed: 36617428 ]
- Elongator complex protein 3 (62 kDa, Protein from Mus musculus)
- Mouse elp123 with bound sam (610 kDa, Complex from Mus musculus)
- Elongator complex protein 1 (149 kDa, Protein from Mus musculus)
- Iron/sulfur cluster (351 Da, Ligand)
- S-adenosylmethionine (398 Da, Ligand)
- Elongator complex protein 2 (93 kDa, Protein from Mus musculus)