SA11 Rotavirus Non-tripsinized Triple Layered Particle
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8olb
Q-score: 0.059
Asensio-Cob D, Perez-Mata C, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D
To Be Published
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Inner capsid protein vp2 (102 kDa, Protein from Rotavirus)
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus)
- Rotavirus a (92 MDa, Virus from Rotavirus A)
SA11 Rotavirus Trypsinized Triple Layered Particle
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 8olc
Q-score: 0.289
Asensio-Cob D, Perez-Mata C, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D
To Be Published
- Outer capsid glycoprotein vp7 (37 kDa, Protein from Rotavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Inner capsid protein vp2 (102 kDa, Protein from Rotavirus)
- Intermediate capsid protein vp6 (44 kDa, Protein from Rotavirus)
- Rotavirus a (92 MDa, Virus from Rotavirus A)
Cryo-EM reconstruction of VP4 assembly from SA11 Rotavirus Non-Tripsinized Triple Layered Particle
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8ole
Q-score: 0.117
Asensio-Cob D, Perez-Mata C, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D
To Be Published
- Rotavirus a (92 MDa, Virus from Rotavirus A)
- Outer capsid protein vp4 (86 kDa, Protein from Rotavirus)
Cryo-EM reconstruction of VP5*/VP8* assembly from SA11 Rotavirus Tripsinized Triple Layered Particle
Resolution: 4.27 Å
EM Method: Single-particle
Fitted PDBs: 8qtz
Q-score: 0.326
Asensio-Cob D, Perez-Mata C, Gomez-Blanco J, Vargas J, Rodriguez JM, Luque D
To Be Published
- Rotavirus a (92 MDa, Virus from Rotavirus A)
- Outer capsid protein vp4 (86 kDa, Protein from Rotavirus)
Cryo-electron microscopy structure of TnsC(1-503)A225V bound to DNA
Resolution: 3.56 Å
EM Method: Single-particle
Fitted PDBs: 7mcs
Q-score: 0.439
Shen Y, Gomez-Blanco J, Petassi MT, Peters JE, Ortega J, Guarne A
Nat Struct Mol Biol (2022) 29 pp. 143-151 [ Pubmed: 35173349 DOI: doi:10.1038/s41594-022-00724-8 ]
- Dna (5'-d(p*gp*cp*gp*cp*gp*cp*gp*cp*gp*cp*gp*cp*gp*cp*g)-3') (4 kDa, DNA from synthetic construct)
- Dna (5'-d(p*cp*gp*cp*gp*cp*gp*cp*gp*cp*gp*cp*gp*cp*gp*c)-3') (4 kDa, DNA from synthetic construct)
- Complex of tnsc bound to dna in the presence of amppnp. (30 kDa, Complex from Escherichia coli)
- Transposon tn7 transposition protein tnsc (59 kDa, Protein from Escherichia coli)
- Tnsc(1-503)a225v bound to dna (Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6w6k
Q-score: 0.288
Jahagirdar D, Jha V, Basu K, Gomez-Blanco J, Vargas J, Ortega J
RNA (2020) 26 pp. 2017-2030 [ DOI: doi:10.1261/rna.075846.120 Pubmed: 32989043 ]
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
- 30s-activated-high-mg2+ (Complex from Escherichia coli K-12)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
- 16s rrna (499 kDa, RNA from Escherichia coli (strain K12))
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli (strain K12))
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
30S-Inactivated-high-Mg2+ Class A
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6w77
Q-score: 0.354
Jahagirdar D, Jha V, Basu K, Gomez-Blanco J, Vargas J, Ortega J
RNA (2020) 26 pp. 2017-2030 [ DOI: doi:10.1261/rna.075846.120 Pubmed: 32989043 ]
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
- 30s-activated-high-mg2+ (Complex from Escherichia coli K-12)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli (strain K12))
- Rna (1519-mer) (499 kDa, RNA from Escherichia coli (strain K12))
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
30S-Inactive-high-Mg2+ Class B
Jahagirdar D, Jha V, Basu K, Gomez-Blanco J, Vargas J, Ortega J
RNA (2020) 26 pp. 2017-2030 [ DOI: doi:10.1261/rna.075846.120 Pubmed: 32989043 ]
30S-Inactive-high-Mg2+ + carbon layer
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6w7m
Q-score: 0.263
Jahagirdar D, Jha V, Basu K, Gomez-Blanco J, Vargas J, Ortega J
RNA (2020) 26 pp. 2017-2030 [ DOI: doi:10.1261/rna.075846.120 Pubmed: 32989043 ]
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
- 30s-activated-high-mg2+ (Complex from Escherichia coli K-12)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
- 16s rrna (499 kDa, RNA from Escherichia coli (strain K12))
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6w7n
Q-score: 0.362
Jahagirdar D, Jha V, Basu K, Gomez-Blanco J, Vargas J, Ortega J
RNA (2020) 26 pp. 2017-2030 [ DOI: doi:10.1261/rna.075846.120 Pubmed: 32989043 ]
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
- 16s rrna (499 kDa, RNA from Escherichia coli (strain K12))
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s-activated-high-mg2+ (Complex from Escherichia coli K-12)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))