Structure of NNQQNY from yeast prion Sup35 with zinc acetate determined by MicroED
Sawaya MR, Rodriguez J, Cascio D, Collazo MJ, Shi D, Reyes FE, Hattne J, Gonen T, Eisenberg DS
PNAS (2016) 113 pp. 11232-11236 [ DOI: doi:10.1073/pnas.1606287113 Pubmed: 27647903 ]
- Eukaryotic peptide chain release factor gtp-binding subunit (779 Da, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Prion fibril composed of a 6-residue segment of sup35 and zinc (3 MDa, Complex from Saccharomyces cerevisiae)
- Acetic acid (60 Da, Ligand)
Structure of NNQQNY from yeast prion Sup35 with cadmium acetate determined by MicroED
Sawaya MR, Rodriguez J, Cascio D, Collazo MJ, Shi D, Reyes FE, Hattne J, Gonen T, Eisenberg DS
PNAS (2016) 113 pp. 11232-11236 [ DOI: doi:10.1073/pnas.1606287113 Pubmed: 27647903 ]
- Eukaryotic peptide chain release factor gtp-binding subunit (779 Da, Protein from Saccharomyces cerevisiae)
- Cadmium ion (112 Da, Ligand)
- Water (18 Da, Ligand)
- Prion fibril composed of a 6-residue segment of sup35 and cadmium (3 MDa, Complex from Saccharomyces cerevisiae)
- Acetate ion (59 Da, Ligand)
Structure of GNNQQNY from yeast prion Sup35 in space group P21 determined by MicroED
Sawaya MR, Rodriguez J, Cascio D, Collazo MJ, Shi D, Reyes FE, Hattne J, Gonen T, Eisenberg DS
PNAS (2016) 113 pp. 11232-11236 [ DOI: doi:10.1073/pnas.1606287113 Pubmed: 27647903 ]
Structure of GNNQQNY from yeast prion Sup35 in space group P212121 determined by MicroED
Sawaya MR, Rodriguez J, Cascio D, Collazo MJ, Shi D, Reyes FE, Hattne J, Gonen T, Eisenberg DS
PNAS (2016) 113 pp. 11232-11236 [ DOI: doi:10.1073/pnas.1606287113 Pubmed: 27647903 ]
MicroED structure of tau VQIVYK peptide at 1.1 A resolution
Resolution: 1.1 Å
EM Method: Electron Crystallography
Fitted PDBs: 5k7n
Q-score: 0.915
de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SK, Hinck CS, Hinck AP, Calero G, Eisenberg D, Gonen T
Nat Methods (2017) 14 pp. 399-402 [ Pubmed: 28192420 DOI: doi:10.1038/nmeth.4178 ]
- Water (18 Da, Ligand)
- Vqivyk (749 Da, Protein from Homo sapiens)
- Vqivyk (747 Da, Cellular component from Homo sapiens)
MicroED structure of lysozyme at 1.8 A resolution
Resolution: 1.8 Å
EM Method: Electron Crystallography
Fitted PDBs: 5k7o
Q-score: 0.843
de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SK, Hinck CS, Hinck AP, Calero G, Eisenberg D, Gonen T
Nat Methods (2017) 14 pp. 399-402 [ Pubmed: 28192420 DOI: doi:10.1038/nmeth.4178 ]
- Water (18 Da, Ligand)
- Lysozyme c (14 kDa, Protein from Gallus gallus)
- Chloride ion (35 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Lysozyme (14 kDa, Cellular component from Gallus gallus)
MicroED structure of xylanase at 2.3 A resolution
Resolution: 2.3 Å
EM Method: Electron Crystallography
Fitted PDBs: 5k7p
Q-score: 0.724
de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SK, Hinck CS, Hinck AP, Calero G, Eisenberg D, Gonen T
Nat Methods (2017) 14 pp. 399-402 [ Pubmed: 28192420 DOI: doi:10.1038/nmeth.4178 ]
- Water (18 Da, Ligand)
- Endo-1,4-beta-xylanase 2 (20 kDa, Protein from Hypocrea jecorina)
- Xylanase (21 kDa, Cellular component from Trichoderma reesei)
- Iodide ion (126 Da, Ligand)
MicroED structure of thaumatin at 2.5 A resolution
Resolution: 2.5 Å
EM Method: Electron Crystallography
Fitted PDBs: 5k7q
Q-score: 0.714
de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SK, Hinck CS, Hinck AP, Calero G, Eisenberg D, Gonen T
Nat Methods (2017) 14 pp. 399-402 [ Pubmed: 28192420 DOI: doi:10.1038/nmeth.4178 ]
- Thaumatin-1 (22 kDa, Protein from Thaumatococcus daniellii)
- Water (18 Da, Ligand)
- Thaumatin (22 kDa, Cellular component from Thaumatococcus daniellii)
MicroED structure of trypsin at 1.7 A resolution
Resolution: 1.7 Å
EM Method: Electron Crystallography
Fitted PDBs: 5k7r
Q-score: 0.855
de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SK, Hinck CS, Hinck AP, Calero G, Eisenberg D, Gonen T
Nat Methods (2017) 14 pp. 399-402 [ Pubmed: 28192420 DOI: doi:10.1038/nmeth.4178 ]
- Calcium ion (40 Da, Ligand)
- Water (18 Da, Ligand)
- Trypsin (23 kDa, Cellular component from Bos taurus)
- Cationic trypsin (23 kDa, Protein from Bos taurus)
MicroED structure of proteinase K at 1.6 A resolution
Resolution: 1.6 Å
EM Method: Electron Crystallography
Fitted PDBs: 5k7s
Q-score: 0.891
de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SK, Hinck CS, Hinck AP, Calero G, Eisenberg D, Gonen T
Nat Methods (2017) 14 pp. 399-402 [ Pubmed: 28192420 DOI: doi:10.1038/nmeth.4178 ]
- Calcium ion (40 Da, Ligand)
- Water (18 Da, Ligand)
- Proteinase k (28 kDa, Cellular component from Engyodontium album)
- Proteinase k (28 kDa, Protein from Engyodontium album)