MicroED structure of bovine liver catalase with missing cone solved by suspended drop
Resolution: 4.0 Å
EM Method: Electron Crystallography
Fitted PDBs: 9bdj
Q-score: 0.483
Gillman C, Bu G, Danelius E, Hattne J, Nannenga BL, Gonen T
J Struct Biol X (2024) 9 pp. 100102-100102 [ DOI: doi:10.1016/j.yjsbx.2024.100102 Pubmed: 38962493 ]
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Bovine liver catalase (Complex from Bos taurus)
- Catalase (59 kDa, Protein from Bos taurus)
- Protoporphyrin ix containing fe (616 Da, Ligand)
MicroED structure of the C11 cysteine protease clostripain
Ruma YN, Bu G, Hattne J, Gonen T
J Struct Biol X (2024) 10 pp. 100107-100107 [ DOI: doi:10.1016/j.yjsbx.2024.100107 Pubmed: 39100863 ]
- Clostripain (59 kDa, Complex from Hathewaya histolytica)
- Sodium ion (22 Da, Ligand)
- Water (18 Da, Ligand)
- Clostripain (59 kDa, Protein from Hathewaya histolytica)
Resolution: 2.15 Å
EM Method: Electron Crystallography
Fitted PDBs: 8vd7
Q-score: 0.717
Gillman C, Bu G, Danelius E, Hattne J, Nannenga BL, Gonen T
J Struct Biol X (2024) 9 pp. 100102-100102 [ DOI: doi:10.1016/j.yjsbx.2024.100102 Pubmed: 38962493 ]
- Water (18 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- 3c-like proteinase nsp5 (33 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 main protease (mpro) (Complex from Severe acute respiratory syndrome coronavirus 2)
MicroED structure of an Aeropyrum pernix protoglobin mutant
Resolution: 2.1 Å
EM Method: Electron Crystallography
Fitted PDBs: 8eum
Q-score: 0.741
Danelius E, Porter NJ, Unge J, Arnold FH, Gonen T
J Am Chem Soc (2023) 145 pp. 7159-7165 [ DOI: doi:10.1021/jacs.2c12004 Pubmed: 36948184 ]
- Homotetramer of aeropyrum pernix protoglobin (apepgb) c45g, w59l, y60v, v63r, c102s, f145q, i149l mutant (Complex from Aeropyrum pernix)
- Imidazole (69 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Protogloblin appgb (22 kDa, Protein from Aeropyrum pernix)
- Water (18 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
The MicroED structure of proteinase K crystallized by suspended drop crystallization
Resolution: 2.1 Å
EM Method: Electron Crystallography
Fitted PDBs: 8sdk
Q-score: 0.739
Gillman C, Nicolas WJ, Martynowycz MW, Gonen T
IUCrJ (2023) 10 pp. 430-436 [ DOI: doi:10.1107/S2052252523004141 Pubmed: 37223996 ]
- Calcium ion (40 Da, Ligand)
- Proteinase k from tritirachium album (28 kDa, Cellular component from Parengyodontium album)
- Sulfate ion (96 Da, Ligand)
- Proteinase k (28 kDa, Protein from Parengyodontium album)
- Water (18 Da, Ligand)
MicroED structure of Proteinase K from lamellae milled from multiple plasma sources
Resolution: 1.39 Å
EM Method: Electron Crystallography
Fitted PDBs: 8fyo
Q-score: 0.911
Martynowycz MW, Shiriaeva A, Clabbers MTB, Nicolas WJ, Weaver SJ, Hattne J, Gonen T
Nat Commun (2023) 14 pp. 1086-1086 [ Pubmed: 36841804 DOI: doi:10.1038/s41467-023-36733-4 ]
- Calcium ion (40 Da, Ligand)
- Proteinase k (28 kDa, Protein from Parengyodontium album)
- Proteinase k (28 kDa, Complex from Parengyodontium album)
- Nitrate ion (62 Da, Ligand)
- Water (18 Da, Ligand)
Zebrafish MFSD2A isoform B in inward open ligand bound conformation
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8d2s
Q-score: 0.543
Nguyen C, Lei HT, Lai LTF, Gallenito MJ, Mu X, Matthies D, Gonen T
Nat Commun (2023) 14 pp. 2571-2571 [ Pubmed: 37156797 DOI: doi:10.1038/s41467-023-37702-7 ]
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Single-particle cryo-em map of mfsd2a isoform b from zebrafish with a fab in the inward open ligand bound conformation at an average resolution of 2.9 a, filtered to local resolution (56 kDa, Complex from Danio rerio)
- Sodium-dependent lysophosphatidylcholine symporter 1-b (56 kDa, Protein from Danio rerio)
- Sodium ion (22 Da, Ligand)
- [(2~{r})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] (9~{z},12~{z},15~{z})-octadeca-9,12,15-trienoate (518 Da, Ligand)
- Fab heavy chain (20 kDa, Protein from Mus musculus)
- Fab light chain (20 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
Zebrafish MFSD2A isoform B in inward open ligand-free conformation
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8d2t
Q-score: 0.481
Nguyen C, Lei HT, Lai LTF, Gallenito MJ, Mu X, Matthies D, Gonen T
Nat Commun (2023) 14 pp. 2571-2571 [ Pubmed: 37156797 DOI: doi:10.1038/s41467-023-37702-7 ]
- Sodium-dependent lysophosphatidylcholine symporter 1-b (56 kDa, Protein from Danio rerio)
- Single-particle cryo-em map of mfsd2a isoform b from zebrafish with a fab in the inward open ligand-free conformation at an average resolution of 3.4 a, filtered to local resolution (56 kDa, Complex from Danio rerio)
- Fab light chain (20 kDa, Protein from Mus musculus)
- Fab heavy chain (20 kDa, Protein from Mus musculus)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Water (18 Da, Ligand)
Zebrafish MFSD2A isoform B in inward open ligand 1A conformation
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8d2u
Q-score: 0.489
Nguyen C, Lei HT, Lai LTF, Gallenito MJ, Mu X, Matthies D, Gonen T
Nat Commun (2023) 14 pp. 2571-2571 [ Pubmed: 37156797 DOI: doi:10.1038/s41467-023-37702-7 ]
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Sodium-dependent lysophosphatidylcholine symporter 1-b (56 kDa, Protein from Danio rerio)
- Sodium ion (22 Da, Ligand)
- [(2~{r})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] (9~{z},12~{z},15~{z})-octadeca-9,12,15-trienoate (518 Da, Ligand)
- Fab heavy chain (20 kDa, Protein from Mus musculus)
- Fab light chain (20 kDa, Protein from Mus musculus)
- Single-particle cryo-em map of mfsd2a isoform b from zebrafish with a fab in the inward open ligand 1a conformation at an average resolution of 3.3 a, filtered to local resolution (56 kDa, Complex from Danio rerio)
- Water (18 Da, Ligand)
Zebrafish MFSD2A isoform B in inward open ligand 1B conformation
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8d2v
Q-score: 0.408
Nguyen C, Lei HT, Lai LTF, Gallenito MJ, Mu X, Matthies D, Gonen T
Nat Commun (2023) 14 pp. 2571-2571 [ Pubmed: 37156797 DOI: doi:10.1038/s41467-023-37702-7 ]
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Sodium-dependent lysophosphatidylcholine symporter 1-b (56 kDa, Protein from Danio rerio)
- Sodium ion (22 Da, Ligand)
- [(2~{r})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] (9~{z},12~{z},15~{z})-octadeca-9,12,15-trienoate (518 Da, Ligand)
- Fab heavy chain (20 kDa, Protein from Mus musculus)
- Fab light chain (20 kDa, Protein from Mus musculus)
- Single-particle cryo-em map of mfsd2a isoform b from zebrafish with a fab in the inward open ligand 1b conformation at an average resolution of 4.1 a, filtered to local resolution (56 kDa, Complex from Danio rerio)