Cryo-EM structure of MRV outer shell
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9cyt
Q-score: 0.526
Liu X, Xia X, Martynowycz MW, Gonen T, Zhou ZH
Nat Commun (2024) 15 pp. 10638-10638 [ Pubmed: 39639006 DOI: doi:10.1038/s41467-024-54968-7 ]
- Outer capsid protein mu-1n (76 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Mammalian orthoreovirus 3 dearing (Virus from Mammalian orthoreovirus 3 Dearing)
- Outer capsid protein sigma-3 (41 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Outer capsid protein lambda-2 (144 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
Cryo-EM structure of MRV full core
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9cyx
Q-score: 0.535
Liu X, Xia X, Martynowycz MW, Gonen T, Zhou ZH
Nat Commun (2024) 15 pp. 10638-10638 [ Pubmed: 39639006 DOI: doi:10.1038/s41467-024-54968-7 ]
- Outer capsid protein lambda-2 (143 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Inner capsid protein sigma-2 (47 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Mammalian orthoreovirus 3 dearing (Virus from Mammalian orthoreovirus 3 Dearing)
- Lambda 1 (141 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
Cryo-EM structure of MRV virion
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9cyy
Q-score: 0.586
Liu X, Xia X, Martynowycz MW, Gonen T, Zhou ZH
Nat Commun (2024) 15 pp. 10638-10638 [ Pubmed: 39639006 DOI: doi:10.1038/s41467-024-54968-7 ]
- Mammalian orthoreovirus 3 dearing (Virus from Mammalian orthoreovirus 3 Dearing)
- Outer capsid protein lambda-2 (144 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Mu2 (83 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Rna-directed rna polymerase (142 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Inner capsid protein sigma-2 (47 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Outer capsid protein sigma-3 (41 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Outer capsid protein mu-1 (76 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
- Lambda 1 (141 kDa, Protein from Mammalian orthoreovirus 3 Dearing)
MicroED structure of bovine liver catalase with missing cone solved by suspended drop
Resolution: 4.0 Å
EM Method: Electron Crystallography
Fitted PDBs: 9bdj
Q-score: 0.483
Gillman C, Bu G, Danelius E, Hattne J, Nannenga BL, Gonen T
J Struct Biol X (2024) 9 pp. 100102-100102 [ DOI: doi:10.1016/j.yjsbx.2024.100102 Pubmed: 38962493 ]
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Bovine liver catalase (Complex from Bos taurus)
- Catalase (59 kDa, Protein from Bos taurus)
- Protoporphyrin ix containing fe (616 Da, Ligand)
MicroED structure of the C11 cysteine protease clostripain
Ruma YN, Bu G, Hattne J, Gonen T
J Struct Biol X (2024) 10 pp. 100107-100107 [ DOI: doi:10.1016/j.yjsbx.2024.100107 Pubmed: 39100863 ]
- Clostripain (59 kDa, Complex from Hathewaya histolytica)
- Sodium ion (22 Da, Ligand)
- Water (18 Da, Ligand)
- Clostripain (59 kDa, Protein from Hathewaya histolytica)
Resolution: 2.15 Å
EM Method: Electron Crystallography
Fitted PDBs: 8vd7
Q-score: 0.717
Gillman C, Bu G, Danelius E, Hattne J, Nannenga BL, Gonen T
J Struct Biol X (2024) 9 pp. 100102-100102 [ DOI: doi:10.1016/j.yjsbx.2024.100102 Pubmed: 38962493 ]
- Water (18 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- 3c-like proteinase nsp5 (33 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 main protease (mpro) (Complex from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of VP3-VP6 heterohexamer
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8w12
Q-score: 0.42
Xia X, Sung PY, Martynowycz MW, Gonen T, Roy P, Zhou ZH
Cell (2024) 187 pp. 2236-2249.e17 [ DOI: doi:10.1016/j.cell.2024.03.007 Pubmed: 38614100 ]
- Vp6 (22 kDa, Protein from Bluetongue virus (serotype 1 / isolate South Africa))
- Bluetongue virus (serotype 1 / isolate south africa) (460 kDa, Virus from Bluetongue virus (serotype 1 / isolate South Africa))
- Core protein vp3 (105 kDa, Protein from Bluetongue virus (serotype 1 / isolate South Africa))
Cryo-EM structure of BTV star-subcore
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 8w19
Q-score: 0.32
Xia X, Sung PY, Martynowycz MW, Gonen T, Roy P, Zhou ZH
Cell (2024) 187 pp. 2236-2249.e17 [ DOI: doi:10.1016/j.cell.2024.03.007 Pubmed: 38614100 ]
- Vp6 (35 kDa, Protein from Bluetongue virus (serotype 1 / isolate South Africa))
- Bluetongue virus (serotype 1 / isolate south africa) (460 kDa, Virus from Bluetongue virus (serotype 1 / isolate South Africa))
- Core protein vp3 (103 kDa, Protein from Bluetongue virus (serotype 1 / isolate South Africa))
Cryo-EM structure of BTV pre-subcore
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8w1c
Q-score: 0.407
Xia X, Sung PY, Martynowycz MW, Gonen T, Roy P, Zhou ZH
Cell (2024) 187 pp. 2236-2249.e17 [ DOI: doi:10.1016/j.cell.2024.03.007 Pubmed: 38614100 ]
Cryo-EM structure of BTV virion
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8w1o
Q-score: 0.558
Xia X, Sung PY, Martynowycz MW, Gonen T, Roy P, Zhou ZH
Cell (2024) 187 pp. 2236-2249.e17 [ DOI: doi:10.1016/j.cell.2024.03.007 Pubmed: 38614100 ]
- Rna-directed rna polymerase (149 kDa, Protein from Bluetongue virus (serotype 1 / isolate South Africa))
- Core protein vp3 (103 kDa, Protein from Bluetongue virus (serotype 1 / isolate South Africa))
- Bluetongue virus (serotype 1 / isolate south africa) (Virus from Bluetongue virus (serotype 1 / isolate South Africa))
- Rna-1 (2 kDa, RNA from Bluetongue virus (serotype 1 / isolate South Africa))
- Outer capsid protein vp2 (112 kDa, Protein from Bluetongue virus (serotype 1 / isolate South Africa))
- Rna-2 (2 kDa, RNA from Bluetongue virus (serotype 1 / isolate South Africa))