Omicron spike trimer with 6m6 antibody
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7wjy
Q-score: 0.31
Wang Y, Zhan W, Liu J, Wang Y, Zhang X, Zhang M, Han L, Ma Y, Lu L, Wen Y, Chen Z, Zhao J, Wu F, Sun L, Huang J
Cell Res (2022) 32 pp. 862-865 [ DOI: doi:10.1038/s41422-022-00684-0 Pubmed: 35768499 ]
- 6m6 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 6m6 light chain (22 kDa, Protein from Homo sapiens)
- Omicron spike with 6m6 (Complex)
- 6m6 heavy chain (24 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
Omicron Spike bitrimer with 6m6 antibody
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 7wjz
Q-score: 0.288
Wang Y, Zhan W, Liu J, Wang Y, Zhang X, Zhang M, Han L, Ma Y, Lu L, Wen Y, Chen Z, Zhao J, Wu F, Sun L, Huang J
Cell Res (2022) 32 pp. 862-865 [ DOI: doi:10.1038/s41422-022-00684-0 Pubmed: 35768499 ]
- 6m6 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 6m6 light chain (22 kDa, Protein from Homo sapiens)
- Omicron spike with 6m6 (Complex)
- 6m6 heavy chain (24 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
Local refine of Omicron spike bitrimer with 6m6 antibody
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 7wk0
Q-score: 0.431
Wang Y, Zhan W, Liu J, Wang Y, Zhang X, Zhang M, Han L, Ma Y, Lu L, Wen Y, Chen Z, Zhao J, Wu F, Sun L, Huang J
Cell Res (2022) 32 pp. 862-865 [ DOI: doi:10.1038/s41422-022-00684-0 Pubmed: 35768499 ]
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 6m6 light chain (22 kDa, Protein from Homo sapiens)
- Bn03 (Complex from Homo sapiens)
- Omicron spike with bn03 (Complex)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 6m6 heavy chain (24 kDa, Protein from Homo sapiens)
Resolution: 7.4 Å
EM Method: Single-particle
Fitted PDBs: 7q3n
Q-score: 0.069
Stsiapanava A, Xu C, Nishio S, Han L, Yamakawa N, Carroni M, Tunyasuvunakool K, Jumper J, de Sanctis D, Wu B, Jovine L
Nat Struct Mol Biol (2022) 29 pp. 190-193 [ Pubmed: 35273390 DOI: doi:10.1038/s41594-022-00729-3 ]
- Uromodulin (Complex from Homo sapiens)
- Type 1 fimbiral adhesin fimh (18 kDa, Protein from Escherichia coli (strain UTI89 / UPEC))
- Complex of human uromodulin (umod)/tamm-horsfall protein (thp) and the lectin domain of the fimh adhesin of uropathogenic e. coli (Complex)
- Uromodulin (61 kDa, Protein from Homo sapiens)
- Type 1 fimbiral adhesin fimh (Complex from Escherichia coli (strain UTI89 / UPEC))
S protein of SARS-CoV-2 in complex with 2G1
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7x08
Q-score: 0.458
Ma H, Guo Y, Tang H, Tseng CK, Wang L, Zong H, Wang Z, He Y, Chang Y, Wang S, Huang H, Ke Y, Yuan Y, Wu M, Zhang Y, Drelich A, Kempaiah KR, Peng BH, Wang A, Yang K, Yin H, Liu J, Yue Y, Xu W, Zhu S, Ji T, Zhang X, Wang Z, Li G, Liu G, Song J, Mu L, Xiang Z, Song Z, Chen H, Bian Y, Zhang B, Chen H, Zhang J, Liao Y, Zhang L, Yang L, Chen Y, Gilly J, Xiao X, Han L, Jiang H, Xie Y, Zhou Q, Zhu J
Cell Discov (2022) 8 pp. 16-16 [ DOI: doi:10.1038/s41421-022-00381-7 Pubmed: 35169121 ]
- S protein of sars-cov-2 in complex with 2g1 (Complex)
- Light chain of 2g1 (22 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Heavy chain of 2g1 (49 kDa, Protein from Homo sapiens)
- 2g1 (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- Linoleic acid (280 Da, Ligand)
- S protein of sars-cov-2 (Complex from Severe acute respiratory syndrome coronavirus)
S protein of SARS-CoV-2 in complex with 2G1 focused on RBD_2G1 sub-complex
Ma H, Guo Y, Tang H, Tseng CK, Wang L, Zong H, Wang Z, He Y, Chang Y, Wang S, Huang H, Ke Y, Yuan Y, Wu M, Zhang Y, Drelich A, Kempaiah KR, Peng BH, Wang A, Yang K, Yin H, Liu J, Yue Y, Xu W, Zhu S, Ji T, Zhang X, Wang Z, Li G, Liu G, Song J, Mu L, Xiang Z, Song Z, Chen H, Bian Y, Zhang B, Chen H, Zhang J, Liao Y, Zhang L, Yang L, Chen Y, Gilly J, Xiao X, Han L, Jiang H, Xie Y, Zhou Q, Zhu J
Cell Discov (2022) 8 pp. 16-16 [ DOI: doi:10.1038/s41421-022-00381-7 Pubmed: 35169121 ]
Structural insights into the activation of human calcium-sensing receptor
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7e6t
Q-score: 0.411
Chen X, Wang L, Cui Q, Ding Z, Han L, Kou Y, Zhang W, Wang H, Jia X, Dai M, Shi Z, Li Y, Li X, Geng Y
eLife (2021) 10 [ Pubmed: 34467854 DOI: doi:10.7554/eLife.68578 ]
- Phosphate ion (94 Da, Ligand)
- Casr, tnca, ca, po4 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Extracellular calcium-sensing receptor (97 kDa, Protein from Homo sapiens)
- Cyclomethyltryptophan (216 Da, Ligand)
the complex of inactive CaSR and NB2D11
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 7e6u
Q-score: 0.146
Chen X, Wang L, Cui Q, Ding Z, Han L, Kou Y, Zhang W, Wang H, Jia X, Dai M, Shi Z, Li Y, Li X, Geng Y
eLife (2021) 10 [ Pubmed: 34467854 DOI: doi:10.7554/eLife.68578 ]
- Extracellular calcium-sensing receptor (97 kDa, Protein from Homo sapiens)
- Nb-2d11 (15 kDa, Protein from Escherichia phage EcSzw-2)
- Casr (Complex from Homo sapiens)