Cytochrome c-type biogenesis protein CcmABCD from E. coli
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7f02
Q-score: 0.491
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ Pubmed: 36307425 DOI: doi:10.1038/s41467-022-34136-5 ]
- Phosphate ion (94 Da, Ligand)
- Cytochrome c-type biogenesis protein ccmabcd (130 kDa, Complex from Escherichia coli BL21(DE3))
- Magnesium ion (24 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
- Cytochrome c biogenesis atp-binding export protein ccma (23 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
Cytochrome c-type biogenesis protein CcmABCD from E. coli in complex with ANP
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 7f03
Q-score: 0.498
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ Pubmed: 36307425 DOI: doi:10.1038/s41467-022-34136-5 ]
- Cytochrome c-type biogenesis protein ccmabcd (130 kDa, Complex from Escherichia coli BL21(DE3))
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Water (18 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
- Cytochrome c biogenesis atp-binding export protein ccma (23 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
Cytochrome c-type biogenesis protein CcmABCD from E. coli in complex with Heme and ATP.
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 7f04
Q-score: 0.561
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ Pubmed: 36307425 DOI: doi:10.1038/s41467-022-34136-5 ]
- Cytochrome c-type biogenesis protein ccmabcd (130 kDa, Complex from Escherichia coli BL21(DE3))
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Water (18 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
- Cytochrome c biogenesis atp-binding export protein ccma (23 kDa, Protein from Escherichia coli BL21(DE3))
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
Cytochrome c-type biogenesis protein CcmABCD
Resolution: 3.98 Å
EM Method: Single-particle
Fitted PDBs: 7vfj
Q-score: 0.323
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ Pubmed: 36307425 DOI: doi:10.1038/s41467-022-34136-5 ]
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
- Cytochrome c biogenesis atp-binding export protein ccma (23 kDa, Protein from Escherichia coli BL21(DE3))
- The cytochrome c maturation complex ccmabcd. (130 kDa, Complex from Escherichia coli BL21(DE3))
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
Cytochrome c-type biogenesis protein CcmABCD from E. coli in complex with heme and single ATP
Resolution: 4.03 Å
EM Method: Single-particle
Fitted PDBs: 7vfp
Q-score: 0.31
Li J, Zheng W, Gu M, Han L, Luo Y, Yu K, Sun M, Zong Y, Ma X, Liu B, Lowder EP, Mendez DL, Kranz RG, Zhang K, Zhu J
Nat Commun (2022) 13 pp. 6422-6422 [ Pubmed: 36307425 DOI: doi:10.1038/s41467-022-34136-5 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Water (18 Da, Ligand)
- Cytochrome c biogenesis atp-binding export protein ccma (22 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein b (23 kDa, Protein from Escherichia coli BL21(DE3))
- Protoporphyrin ix containing fe (616 Da, Ligand)
- The cytochrome c maturation complex ccmabcd (130 kDa, Complex from Escherichia coli BL21(DE3))
- Heme exporter protein d (7 kDa, Protein from Escherichia coli BL21(DE3))
- Heme exporter protein c (27 kDa, Protein from Escherichia coli BL21(DE3))
structure of C2 projections and MIPs
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7n61
Q-score: 0.405
Han L, Rao Q, Yang R, Wang Y, Chai P, Xiong Y, Zhang K
Nat Struct Mol Biol (2022) 29 pp. 472-482 [ Pubmed: 35578022 DOI: doi:10.1038/s41594-022-00769-9 ]
- Fap196 (64 kDa, Protein from Chlamydomonas reinhardtii)
- Flagellar wd repeat-containing protein pf20 (65 kDa, Protein from Chlamydomonas reinhardtii)
- Unassigned protein-2 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Fap70 (111 kDa, Protein from Chlamydomonas reinhardtii)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Fap239 (57 kDa, Protein from Chlamydomonas reinhardtii)
- Fap147 (102 kDa, Protein from Chlamydomonas reinhardtii)
- Unassigned protein-3 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Fap213 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Structure of c2 projections and mips (Complex from Chlamydomonas reinhardtii)
- Tubulin beta (49 kDa, Protein from Chlamydomonas reinhardtii)
- Unassigned protein-1 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Unassigned protein-5 (7 kDa, Protein from Chlamydomonas reinhardtii)
- Fap225 (81 kDa, Protein from Chlamydomonas reinhardtii)
- Fap65 (233 kDa, Protein from Chlamydomonas reinhardtii)
- Unassigned protein-6 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Fap178 (23 kDa, Protein from Chlamydomonas reinhardtii)
- Kinesin-like protein (83 kDa, Protein from Chlamydomonas reinhardtii)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Unassigned protein-4 (3 kDa, Protein from Chlamydomonas reinhardtii)
- Tubulin alpha (49 kDa, Protein from Chlamydomonas reinhardtii)
Han L, Rao Q, Yang R, Wang Y, Chai P, Xiong Y, Zhang K
Nat Struct Mol Biol (2022) 29 pp. 472-482 [ Pubmed: 35578022 DOI: doi:10.1038/s41594-022-00769-9 ]
- Unknown protein (3 kDa, Protein from Chlamydomonas reinhardtii)
- Fap47 (319 kDa, Protein from Chlamydomonas reinhardtii)
- Fap279 (43 kDa, Protein from Chlamydomonas reinhardtii)
- Fap289 (46 kDa, Protein from Chlamydomonas reinhardtii)
- Fap216 (79 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (11 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (8 kDa, Protein from Chlamydomonas reinhardtii)
- Fap119 (33 kDa, Protein from Chlamydomonas reinhardtii)
- Fap297 (99 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (7 kDa, Protein from Chlamydomonas reinhardtii)
- Fap76 (172 kDa, Protein from Chlamydomonas reinhardtii)
- Fap114 (31 kDa, Protein from Chlamydomonas reinhardtii)
- Fap42 (269 kDa, Protein from Chlamydomonas reinhardtii)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Unknown protein (9 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (9 kDa, Protein from Chlamydomonas reinhardtii)
- Fap69 (114 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (4 kDa, Protein from Chlamydomonas reinhardtii)
- Fap7 (54 kDa, Protein from Chlamydomonas reinhardtii)
- Fap108 (47 kDa, Protein from Chlamydomonas reinhardtii)
- Fap92 (153 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (4 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (16 kDa, Protein from Chlamydomonas reinhardtii)
- Fap101 (85 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (4 kDa, Protein from Chlamydomonas reinhardtii)
- Fap54 (332 kDa, Protein from Chlamydomonas reinhardtii)
- Heat shock protein 70a (71 kDa, Protein from Chlamydomonas reinhardtii)
- C1 microtubule and its associated projection of central pair (Complex from Chlamydomonas reinhardtii)
- Fap99 (90 kDa, Protein from Chlamydomonas reinhardtii)
- Fap74 (204 kDa, Protein from Chlamydomonas reinhardtii)
- Pf16 (54 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (15 kDa, Protein from Chlamydomonas reinhardtii)
- Tubulin beta (49 kDa, Protein from Chlamydomonas reinhardtii)
- Cpc1 (205 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (5 kDa, Protein from Chlamydomonas reinhardtii)
- Hydin (425 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (9 kDa, Protein from Chlamydomonas reinhardtii)
- Fap194 (57 kDa, Protein from Chlamydomonas reinhardtii)
- Phosphopyruvate hydratase (51 kDa, Protein from Chlamydomonas reinhardtii)
- Hth_9 domain-containing protein (109 kDa, Protein from Chlamydomonas reinhardtii)
- Fap305 (47 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (1 kDa, Protein from Chlamydomonas reinhardtii)
- Unknown protein (14 kDa, Protein from Chlamydomonas reinhardtii)
- Calmodulin (18 kDa, Protein from Chlamydomonas reinhardtii)
- Fap46 (289 kDa, Protein from Chlamydomonas reinhardtii)
- Fap275 (18 kDa, Protein from Chlamydomonas reinhardtii)
- Dpy30 (11 kDa, Protein from Chlamydomonas reinhardtii)
- Pf6 (237 kDa, Protein from Chlamydomonas reinhardtii)
- Fap246 (120 kDa, Protein from Chlamydomonas reinhardtii)
- Fap81 (234 kDa, Protein from Chlamydomonas reinhardtii)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Fap227 (19 kDa, Protein from Chlamydomonas reinhardtii)
- Fap360 (80 kDa, Protein from Chlamydomonas reinhardtii)
- Fap15 (34 kDa, Protein from Chlamydomonas reinhardtii)
- Tubulin alpha (49 kDa, Protein from Chlamydomonas reinhardtii)
Resolution: 6.1 Å
EM Method: Single-particle
Fitted PDBs: 7pfp
Q-score: 0.182
Stsiapanava A, Xu C, Nishio S, Han L, Yamakawa N, Carroni M, Tunyasuvunakool K, Jumper J, de Sanctis D, Wu B, Jovine L
Nat Struct Mol Biol (2022) 29 pp. 190-193 [ DOI: doi:10.1038/s41594-022-00729-3 Pubmed: 35273390 ]
- Uromodulin (umod)/tamm-horsfall protein (thp) (Complex from Homo sapiens)
- Uromodulin (69 kDa, Protein from Homo sapiens)