Cryo-EM structure of SARS-CoV-2 Delta RBD in complex with golden hamster ACE2 (local refinement)
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 8ka8
Q-score: 0.486
Niu S, Zhao Z, Liu Z, Rong X, Chai Y, Bai B, Han P, Shang G, Ren J, Wang Y, Zhao X, Liu K, Tian WX, Wang Q, Gao GF
J Virol (2024) 98 pp. e0115723-e0115723 [ DOI: doi:10.1128/jvi.01157-23 Pubmed: 38305152 ]
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Delta rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Cryo-em structure of sars-cov-2 delta rbd in complex with golden hamster ace2 (local refinement) (Complex)
- Golden hamster angiotensin-converting enzyme 2 (Complex from Mesocricetus auratus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Angiotensin-converting enzyme (68 kDa, Protein from Mesocricetus auratus)
Cryo-EM structure of SARS-CoV-2 BA.3 RBD in complex with golden hamster ACE2 (local refinement)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8kc2
Q-score: 0.556
Niu S, Zhao Z, Liu Z, Rong X, Chai Y, Bai B, Han P, Shang G, Ren J, Wang Y, Zhao X, Liu K, Tian WX, Wang Q, Gao GF
J Virol (2024) 98 pp. e0115723-e0115723 [ DOI: doi:10.1128/jvi.01157-23 Pubmed: 38305152 ]
- Ba.3 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Golden hamster angiotensin-converting enzyme 2 (Complex from Mesocricetus auratus)
- Cryo-em structure of sars-cov-2 ba.3 rbd in complex with golden hamster ace2 (local refinement) (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Angiotensin-converting enzyme (68 kDa, Protein from Mesocricetus auratus)
Cryo-EM structure of SARS-CoV spike receptor-binding domain in complex with sea lion ACE2
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 7wsg
Q-score: 0.464
Li S, Yang R, Zhang D, Han P, Xu Z, Chen Q, Zhao R, Zhao X, Qu X, Zheng A, Wang L, Li L, Hu Y, Zhang R, Su C, Niu S, Zhang Y, Qi J, Liu K, Wang Q, Gao GF
Natl Sci Rev (2022) 9 pp. nwac122-nwac122 [ Pubmed: 36187898 DOI: doi:10.1093/nsr/nwac122 ]
- Sars-cov spike receptor-binding domain in complex with sea lion ace2 (Complex from Mammalia)
- Zinc ion (65 Da, Ligand)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- Angiotensin-converting enzyme (93 kDa, Protein from Mammalia)
- Sars-cov spike receptor-binding domain (Complex from Severe acute respiratory syndrome coronavirus)
- Sea lion ace2 (Complex)
Cryo-EM structure of SARS-CoV-2 spike receptor-binding domain in complex with sea lion ACE2
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7wsh
Q-score: 0.559
Li S, Yang R, Zhang D, Han P, Xu Z, Chen Q, Zhao R, Zhao X, Qu X, Zheng A, Wang L, Li L, Hu Y, Zhang R, Su C, Niu S, Zhang Y, Qi J, Liu K, Wang Q, Gao GF
Natl Sci Rev (2022) 9 pp. nwac122-nwac122 [ Pubmed: 36187898 DOI: doi:10.1093/nsr/nwac122 ]
- Sars-cov-2 spike receptor-binding domain in complex with sea lion ace2 (Complex from Mammalia)
- Zinc ion (65 Da, Ligand)
- Angiotensin-converting enzyme (93 kDa, Protein from Mammalia)
- Sars-cov-2 spike receptor-binding domain (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sea lion ace2 (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 7wse
Q-score: 0.504
Li S, Yang R, Zhang D, Han P, Xu Z, Chen Q, Zhao R, Zhao X, Qu X, Zheng A, Wang L, Li L, Hu Y, Zhang R, Su C, Niu S, Zhang Y, Qi J, Liu K, Wang Q, Gao GF
Natl Sci Rev (2022) 9 pp. nwac122-nwac122 [ Pubmed: 36187898 DOI: doi:10.1093/nsr/nwac122 ]
- Sars-cov-2 spike receptor-binding domain (Complex)
- Minke whale ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Angiotensin-converting enzyme (85 kDa, Protein from Mammalia)
- Sars-cov-2 spike receptor-binding domain complexed with its receptor minke whale ace2 (Complex from Mammalia)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of SARS-CoV spike receptor-binding domain in complex with minke whale ACE2
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 7wsf
Q-score: 0.544
Li S, Yang R, Zhang D, Han P, Xu Z, Chen Q, Zhao R, Zhao X, Qu X, Zheng A, Wang L, Li L, Hu Y, Zhang R, Su C, Niu S, Zhang Y, Qi J, Liu K, Wang Q, Gao GF
Natl Sci Rev (2022) 9 pp. nwac122-nwac122 [ Pubmed: 36187898 DOI: doi:10.1093/nsr/nwac122 ]
- Sars-cov spike receptor-binding domain (Complex)
- Zinc ion (65 Da, Ligand)
- Minke whale ace2 (Complex from Severe acute respiratory syndrome coronavirus)
- Angiotensin-converting enzyme (85 kDa, Protein from Mammalia)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- Sars-cov spike receptor-binding domain in complex with minke whale ace2 (Complex from Mammalia)
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 7w8s
Q-score: 0.582
Su C, He J, Han P, Bai B, Li D, Cao J, Tian M, Hu Y, Zheng A, Niu S, Chen Q, Rong X, Zhang Y, Li W, Qi J, Zhao X, Yang M, Wang Q, Gao GF
J Virol (2022) 96 pp. e0081422-e0081422 [ Pubmed: 36000849 DOI: doi:10.1128/jvi.00814-22 ]
- Cryo-em structure of sars-cov-2 rbd y453f complexed with american mink ace2 (Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- American mink ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 rbd (Complex)
- Angiotensin-converting enzyme 2 (70 kDa, Protein from Homo sapiens)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7wa1
Q-score: 0.551
Su C, He J, Han P, Bai B, Li D, Cao J, Tian M, Hu Y, Zheng A, Niu S, Chen Q, Rong X, Zhang Y, Li W, Qi J, Zhao X, Yang M, Wang Q, Gao GF
J Virol (2022) 96 pp. e0081422-e0081422 [ Pubmed: 36000849 DOI: doi:10.1128/jvi.00814-22 ]
- Spike protein s1 (25 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- American mink ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Cryo-em structure of sars-cov-2 rbd f486l complexed with american mink ace2 (Complex from Homo sapiens)
- Angiotensin-converting enzyme 2 (70 kDa, Protein from Homo sapiens)
- Sars-cov-2 rbd (Complex)
The complex structure of Omicron BA.1 RBD with BD604, S309,and S304
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 7x1m
Q-score: 0.552
Huang M, Wu L, Zheng A, Xie Y, He Q, Rong X, Han P, Du P, Han P, Zhang Z, Zhao R, Jia Y, Li L, Bai B, Hu Z, Hu S, Niu S, Hu Y, Liu H, Liu B, Cui K, Li W, Zhao X, Liu K, Qi J, Wang Q, Gao GF
Immunity (2022) 55 pp. 1501-1514.e3 [ DOI: doi:10.1016/j.immuni.2022.06.005 Pubmed: 35777362 ]
- Spike protein s1 (23 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Bd604 fab, s309 fab and s304 fab complex with omicron ba.1 rbd (Complex)
- Bd-604 fab light chain (23 kDa, Protein from Homo sapiens)
- S304 fab light chain (23 kDa, Protein from Homo sapiens)
- S309 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Bd-604 fab heavy chain (23 kDa, Protein from Homo sapiens)
- Bd604 fab, s309 fab and s304 fab (Complex from Homo sapiens)
- Omicron ba.1 rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- S304 fab haavy chain (23 kDa, Protein from Homo sapiens)
- S309 fab light chain (23 kDa, Protein from Homo sapiens)
Cryo-EM structure of human ACE2 and GX/P2V/2017 RBD
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ddp
Q-score: 0.502