Focused refinement on the Brf1-TBP-DNA within TFIIIA-TFIIIC-Brf1-TBP complex bound to 5S rRNA gene
Talyzina A, Han Y, Banerjee C, Fishbain S, Reyes A, Vafabakhsh R, He Y
Mol Cell (2023) 83 pp. 2641-2652.e7 [ DOI: doi:10.1016/j.molcel.2023.06.015 Pubmed: 37402369 ]
TFIIIA-TFIIIC complex bound to 5S rRNA gene
Talyzina A, Han Y, Banerjee C, Fishbain S, Reyes A, Vafabakhsh R, He Y
Mol Cell (2023) 83 pp. 2641-2652.e7 [ DOI: doi:10.1016/j.molcel.2023.06.015 Pubmed: 37402369 ]
TFIIIA-TFIIIC-Brf1-TBP complex bound to 5S rRNA gene
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8ffz
Q-score: 0.333
Talyzina A, Han Y, Banerjee C, Fishbain S, Reyes A, Vafabakhsh R, He Y
Mol Cell (2023) 83 pp. 2641- [ DOI: doi:10.1016/j.molcel.2023.06.015 Pubmed: 37402369 ]
- Dna (151-mer) (52 kDa, DNA from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Dna (151-mer) (52 kDa, DNA from Saccharomyces cerevisiae)
- Transcription factor tau 91 kda subunit (74 kDa, Protein from Saccharomyces cerevisiae)
- Transcription factor tau 60 kda subunit (67 kDa, Protein from Saccharomyces cerevisiae)
- Transcription factor iiia (52 kDa, Protein from Saccharomyces cerevisiae)
- Tfiiia-tfiiic-brf1-tbp complex bound to 5srrna gene (810 MDa, Complex from Saccharomyces cerevisiae)
- Transcription factor iiib 70 kda subunit,tata-box-binding protein (82 kDa, Protein from Saccharomyces cerevisiae S288C)
- Transcription factor tau 131 kda subunit (120 kDa, Protein from Saccharomyces cerevisiae)
- Transcription factor tau 95 kda subunit (73 kDa, Protein from Saccharomyces cerevisiae)
- Transcription factor tau 55 kda subunit (49 kDa, Protein from Saccharomyces cerevisiae)
- Transcription factor tau 138 kda subunit (132 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM map of the human BAF base module
Mashtalir N, Suzuki H, Farrell DP, Sankar A, Luo J, Filipovski M, D'Avino AR, St Pierre R, Valencia AM, Onikubo T, Roeder RG, Han Y, He Y, Ranish JA, DiMaio F, Walz T, Kadoch C
Cell (2020) 183 pp. 802-817.e24 [ Pubmed: 33053319 DOI: doi:10.1016/j.cell.2020.09.051 ]
- Baf complex (1 MDa, Complex from Homo sapiens)
Cryo-EM map of the human BAF-nucleosome complex refined with a mask for the nucleosome
Mashtalir N, Suzuki H, Farrell DP, Sankar A, Luo J, Filipovski M, D'Avino AR, St Pierre R, Valencia AM, Onikubo T, Roeder RG, Han Y, He Y, Ranish JA, DiMaio F, Walz T, Kadoch C
Cell (2020) 183 pp. 802-817.e24 [ Pubmed: 33053319 DOI: doi:10.1016/j.cell.2020.09.051 ]
- Baf-nucleosome complex (1 MDa, Complex from Homo sapiens)
Mashtalir N, Suzuki H, Farrell DP, Sankar A, Luo J, Filipovski M, D'Avino AR, St Pierre R, Valencia AM, Onikubo T, Roeder RG, Han Y, He Y, Ranish JA, DiMaio F, Walz T, Kadoch C
Cell (2020) 183 pp. 802-817.e24 [ Pubmed: 33053319 DOI: doi:10.1016/j.cell.2020.09.051 ]
- Baf-nucleosome complex (1 MDa, Complex from Homo sapiens)
Mashtalir N, Suzuki H, Farrell DP, Sankar A, Luo J, Filipovski M, D'Avino AR, St Pierre R, Valencia AM, Onikubo T, Roeder RG, Han Y, He Y, Ranish JA, DiMaio F, Walz T, Kadoch C
Cell (2020) 183 pp. 802-817.e24 [ Pubmed: 33053319 DOI: doi:10.1016/j.cell.2020.09.051 ]
- Baf-nucleosome complex (1 MDa, Complex from Homo sapiens)
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 6uxv
Q-score: 0.322
Han Y, Reyes AA, Malik S, He Y
Nature (2020) 579 pp. 452-455 [ DOI: doi:10.1038/s41586-020-2087-1 Pubmed: 32188938 ]
- Transcription regulatory protein snf12 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Unknown protein (1 kDa, Protein from Saccharomyces cerevisiae S288C)
- Swi/snf body module (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription regulatory protein snf6 (19 kDa, Protein from Saccharomyces cerevisiae S288C)
- Swi/snf chromatin-remodeling complex subunit snf5 (102 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Unknown protein (2 kDa, Protein from Saccharomyces cerevisiae S288C)
- Swi/snf global transcription activator complex subunit swp82 (7 kDa, Protein from Saccharomyces cerevisiae S288C)
- Unknown protein (2 kDa, Protein from Saccharomyces cerevisiae S288C)
- Transcription regulatory protein snf2 (194 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Swi/snf complex subunit swi3 (93 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Swi/snf chromatin-remodeling complex subunit swi1 (148 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Unknown protein (5 kDa, Protein from Saccharomyces cerevisiae S288C)
SWI/SNF nucleosome complex with ADP-BeFx
Resolution: 8.96 Å
EM Method: Single-particle
Fitted PDBs: 6uxw
Q-score: 0.122
Han Y, Reyes AA, Malik S, He Y
Nature (2020) 579 pp. 452-455 [ DOI: doi:10.1038/s41586-020-2087-1 Pubmed: 32188938 ]
- Transcription regulatory protein snf12 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Transcription regulatory protein snf2 (194 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Swi/snf complex subunit swi3 (93 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Unknown protein (5 kDa, Protein from Saccharomyces cerevisiae S288C)
- 601 sequence bottom strand (56 kDa, DNA from synthetic construct)
- Phosphate ion (94 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Transcription regulatory protein snf6 (19 kDa, Protein from Saccharomyces cerevisiae S288C)
- Swi/snf chromatin-remodeling complex subunit snf5 (102 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Swi/snf global transcription activator complex subunit swp82 (7 kDa, Protein from Saccharomyces cerevisiae S288C)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Water (18 Da, Ligand)
- 601 sequence top strand (61 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Actin-related protein 7 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Actin-like protein arp9 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Swi/snf nucleosome complex with adp-befx (Complex from Saccharomyces cerevisiae)
- Beryllium trifluoride ion (66 Da, Ligand)
- Swi/snf chromatin-remodeling complex subunit swi1 (148 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Regulator of ty1 transposition protein 102 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))