Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in 90PS with beryllium fluoride (E2P state)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7drx
Q-score: 0.556
Cell Rep (2022) 38 pp. 110518-110518 [ DOI: doi:10.1016/j.celrep.2022.110518 Pubmed: 35294892 ]
- Magnesium ion (24 Da, Ligand)
- Beryllium trifluoride ion (66 Da, Ligand)
- Dnf1_lem3 complex (Complex from Saccharomyces cerevisiae S288C)
- Phospholipid-transporting atpase dnf1 (178 kDa, Protein from Saccharomyces cerevisiae S288C)
- Alkylphosphocholine resistance protein lem3 (47 kDa, Protein from Saccharomyces cerevisiae S288C)
- (4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in 90PS with AMPPCP (E1-ATP state)
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 7dsh
Q-score: 0.428
Cell Rep (2022) 38 pp. 110518-110518 [ DOI: doi:10.1016/j.celrep.2022.110518 Pubmed: 35294892 ]
- Magnesium ion (24 Da, Ligand)
- Dnf1_lem3 complex (Complex from Saccharomyces cerevisiae S288C)
- Phospholipid-transporting atpase dnf1 (178 kDa, Protein from Saccharomyces cerevisiae S288C)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
- Alkylphosphocholine resistance protein lem3 (47 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 7dsi
Q-score: 0.422
Cell Rep (2022) 38 pp. 110518-110518 [ DOI: doi:10.1016/j.celrep.2022.110518 Pubmed: 35294892 ]
- Magnesium ion (24 Da, Ligand)
- Dnf1_lem3 complex (Complex from Saccharomyces cerevisiae S288C)
- Phospholipid-transporting atpase dnf1 (178 kDa, Protein from Saccharomyces cerevisiae S288C)
- Alkylphosphocholine resistance protein lem3 (47 kDa, Protein from Saccharomyces cerevisiae S288C)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
Resolution: 3.81 Å
EM Method: Single-particle
Fitted PDBs: 7f7f
Q-score: 0.379
Cell Rep (2022) 38 pp. 110518-110518 [ DOI: doi:10.1016/j.celrep.2022.110518 Pubmed: 35294892 ]
- Dnf1_lem3 complex (Complex from Saccharomyces cerevisiae S288C)
- Alkylphosphocholine resistance protein lem3 (47 kDa, Protein from Saccharomyces cerevisiae S288C)
- Phospholipid-transporting atpase dnf1 (178 kDa, Protein from Saccharomyces cerevisiae S288C)
- Magnesium ion (24 Da, Ligand)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7whv
Q-score: 0.573
Cell Rep (2022) 38 pp. 110518-110518 [ DOI: doi:10.1016/j.celrep.2022.110518 Pubmed: 35294892 ]
- Magnesium ion (24 Da, Ligand)
- Beryllium trifluoride ion (66 Da, Ligand)
- Dnf1_lem3 complex (Complex from Saccharomyces cerevisiae S288C)
- Phospholipid-transporting atpase dnf1 (178 kDa, Protein from Saccharomyces cerevisiae S288C)
- Alkylphosphocholine resistance protein lem3 (47 kDa, Protein from Saccharomyces cerevisiae S288C)
- (4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in detergent with AMPPCP (E1-ATP state)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7whw
Q-score: 0.437
Cell Rep (2022) 38 pp. 110518-110518 [ DOI: doi:10.1016/j.celrep.2022.110518 Pubmed: 35294892 ]
- Magnesium ion (24 Da, Ligand)
- Dnf1_lem3 complex (Complex from Saccharomyces cerevisiae S288C)
- Phospholipid-transporting atpase dnf1 (178 kDa, Protein from Saccharomyces cerevisiae S288C)
- Alkylphosphocholine resistance protein lem3 (47 kDa, Protein from Saccharomyces cerevisiae S288C)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
S protein of SARS-CoV-2 in complex with 2G1
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7x08
Q-score: 0.458
Ma H, Guo Y, Tang H, Tseng CK, Wang L, Zong H, Wang Z, He Y, Chang Y, Wang S, Huang H, Ke Y, Yuan Y, Wu M, Zhang Y, Drelich A, Kempaiah KR, Peng BH, Wang A, Yang K, Yin H, Liu J, Yue Y, Xu W, Zhu S, Ji T, Zhang X, Wang Z, Li G, Liu G, Song J, Mu L, Xiang Z, Song Z, Chen H, Bian Y, Zhang B, Chen H, Zhang J, Liao Y, Zhang L, Yang L, Chen Y, Gilly J, Xiao X, Han L, Jiang H, Xie Y, Zhou Q, Zhu J
Cell Discov (2022) 8 pp. 16-16 [ Pubmed: 35169121 DOI: doi:10.1038/s41421-022-00381-7 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- S protein of sars-cov-2 (Complex from Severe acute respiratory syndrome coronavirus)
- Light chain of 2g1 (22 kDa, Protein from Homo sapiens)
- S protein of sars-cov-2 in complex with 2g1 (Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus)
- Linoleic acid (280 Da, Ligand)
- 2g1 (Complex from Homo sapiens)
- Heavy chain of 2g1 (49 kDa, Protein from Homo sapiens)