Cryo-EM structure of Lactobacillus casei DdmE bound with guide and target
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 9iw3
Q-score: 0.438
Huang P, Yan P, Guo L, Fei W, Li Z, Liu J, Kong J, Yao Y, Lu M, Xiao Y, Chen M
Cell Res (2024) 34 pp. 873-876 [ DOI: doi:10.1038/s41422-024-01042-y Pubmed: 39448873 ]
- Dna (25-mer) (7 kDa, DNA from Lacticaseibacillus)
- Lactobacillus casei ddme bound with guide and target (Complex from Lacticaseibacillus)
- Ddme (83 kDa, Protein from Lacticaseibacillus)
- Dna (5'-d(p*cp*tp*tp*gp*ap*tp*ap*cp*gp*ap*c)-3') (3 kDa, DNA from Lacticaseibacillus)
- Dna (5'-d(p*tp*gp*ap*cp*gp*gp*cp*tp*cp*tp*ap*ap*tp*cp*t)-3') (4 kDa, DNA from Lacticaseibacillus)
- Magnesium ion (24 Da, Ligand)
Cryo-EM structure of Lactobacillus casei DdmD dimer bound with DNA
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 9ix4
Q-score: 0.483
Huang P, Yan P, Guo L, Fei W, Li Z, Liu J, Kong J, Yao Y, Lu M, Xiao Y, Chen M
Cell Res (2024) 34 pp. 873-876 [ DOI: doi:10.1038/s41422-024-01042-y Pubmed: 39448873 ]
- Ddmd (137 kDa, Protein from Lacticaseibacillus)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dna (5'-d(p*ap*ap*ap*ap*ap*ap*ap*ap*ap*a)-3') (3 kDa, DNA from Lacticaseibacillus)
- Dna (5'-d(p*tp*ap*tp*gp*ap*gp*tp*ap*tp*ap*tp*cp*c)-3') (3 kDa, DNA from Lacticaseibacillus)
- Lactobacillus casei ddmd bound with dna substrate (Complex from Lacticaseibacillus)
- Dna (5'-d(p*ap*tp*gp*ap*gp*tp*ap*tp*ap*tp*cp*c)-3') (3 kDa, DNA from Lacticaseibacillus)
Cryo-EM structure of Lactobacillus casei DdmDE bound with DNA
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 9ixm
Q-score: 0.464
Huang P, Yan P, Guo L, Fei W, Li Z, Liu J, Kong J, Yao Y, Lu M, Xiao Y, Chen M
Cell Res (2024) 34 pp. 873-876 [ DOI: doi:10.1038/s41422-024-01042-y Pubmed: 39448873 ]
- Ddmd (137 kDa, Protein from Lacticaseibacillus)
- Dna (30-mer) (9 kDa, DNA from Lacticaseibacillus)
- Ddme (83 kDa, Protein from Lacticaseibacillus)
- Magnesium ion (24 Da, Ligand)
- Dna (5'-d(p*tp*gp*ap*cp*gp*gp*cp*tp*cp*tp*ap*ap*tp*cp*t)-3') (4 kDa, DNA from Lacticaseibacillus)
- Lactobacillus casei ddmde bound with dna (Complex from Lacticaseibacillus)
- Dna (30-mer) (9 kDa, DNA from Lacticaseibacillus)
Cryo-EM structure of the magnesium channel CtMrs2 in the closed state
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8q8p
Q-score: 0.55
Li P, Liu S, Wallerstein J, Villones RLE, Huang P, Lindkvist-Petersson K, Meloni G, Lu K, Steen Jensen K, Liin SI, Gourdon P
Nat Struct Mol Biol (2024) [ Pubmed: 39609652 DOI: doi:10.1038/s41594-024-01432-1 ]
- Mrs2 homo-pentamer (Complex from Thermochaetoides thermophila)
- Magnesium ion (24 Da, Ligand)
- Magnesium channel mrs2 (48 kDa, Protein from Thermochaetoides thermophila)
Cryo-EM structure of the magnesium channel CtMrs2 in the open state
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 8q8q
Q-score: 0.513
Li P, Liu S, Wallerstein J, Villones RLE, Huang P, Lindkvist-Petersson K, Meloni G, Lu K, Steen Jensen K, Liin SI, Gourdon P
Nat Struct Mol Biol (2024) [ Pubmed: 39609652 DOI: doi:10.1038/s41594-024-01432-1 ]
- (1r)-2-{[(r)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(dodecanoyloxy)methyl]ethyl (9z)-octadec-9-enoate (661 Da, Ligand)
- Mrs2 homo-pentamer (Complex from Thermochaetoides thermophila)
- Magnesium ion (24 Da, Ligand)
- Magnesium channel mrs2 (49 kDa, Protein from Thermochaetoides thermophila)
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 5-12-18
Sun C, Huang P, Xu X, Vago FS, Li K, Klose T, Jiang XJ, Jiang W
Biomolecules (2024) 14 [ DOI: doi:10.3390/biom14010119 Pubmed: 38254719 ]
- Capsid protein (57 kDa, Protein from Tulane virus)
- Tulane virus (57 MDa, Virus from Tulane virus)
Cryo-EM structure of Tulane virus 9-6-17 variant capsid protein VP1 9-14-18
Sun C, Huang P, Xu X, Vago FS, Li K, Klose T, Jiang XJ, Jiang W
Biomolecules (2024) 14 [ DOI: doi:10.3390/biom14010119 Pubmed: 38254719 ]
- Capsid protein (57 kDa, Protein from Tulane virus)
- Tulane virus (57 MDa, Virus from Tulane virus)