Cryo-EM reconstruction of Escherichia phage N4 capsid
Resolution: 2.45 Å
EM Method: Single-particle
Fitted PDBs: 9e99
Q-score: 0.655
McJarrow-Keller K, Eruera AR, Crowe AJM, Kumaran R, Hyun J, Bostina M
Viruses (2024) 17 [ DOI: doi:10.3390/v17010019 Pubmed: 39861808 ]
- Escherichia phage n4 (Virus from Escherichia phage N4)
- 32 kda protein (29 kDa, Protein from Escherichia phage N4)
- Major capsid protein (44 kDa, Protein from Escherichia phage N4)
Asymmetric unit of bacteriophage PhiM1 mature capsid
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8vb0
Q-score: 0.578
Eruera AR, Hodgkinson-Bean J, Rutter GL, Hills FR, Kumaran R, Crowe AJM, Jadav N, Chang F, McJarrow-Keller K, Jorge F, Hyun J, Kim H, Ryu B, Bostina M
Pnas Nexus (2024) 3 pp. pgae416-pgae416 [ DOI: doi:10.1093/pnasnexus/pgae416 Pubmed: 39351541 ]
- Alpha-paw decoration protein (gp43) (17 kDa, Protein from Pectobacterium phage PhiM1)
- Pectobacterium phage phim1 (Virus from Pectobacterium phage PhiM1)
- Alpha-claw decoration protein (gp44) (6 kDa, Protein from Pectobacterium phage PhiM1)
- Major capsid protein (gp38) (36 kDa, Protein from Pectobacterium phage PhiM1)
C4 pre-infection ejectosome of the mature bacteriophage PhiM1 particle
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8vb2
Q-score: 0.498
Eruera AR, Hodgkinson-Bean J, Rutter GL, Hills FR, Kumaran R, Crowe AJM, Jadav N, Chang F, McJarrow-Keller K, Jorge F, Hyun J, Kim H, Ryu B, Bostina M
Pnas Nexus (2024) 3 pp. pgae416-pgae416 [ DOI: doi:10.1093/pnasnexus/pgae416 Pubmed: 39351541 ]
- Ejection protein 3 (gp50) (21 kDa, Protein from Pectobacterium phage PhiM1)
- Pectobacterium phage phim1 (Virus from Pectobacterium phage PhiM1)
- Octameric ejection protein (gp49) (98 kDa, Protein from Pectobacterium phage PhiM1)
- Tetrameric ejection protein (gp48) (135 kDa, Protein from Pectobacterium phage PhiM1)
C12 portal and adaptor complex of the mature bacteriophage PhiM1 particle
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8vb4
Q-score: 0.534
Eruera AR, Hodgkinson-Bean J, Rutter GL, Hills FR, Kumaran R, Crowe AJM, Jadav N, Chang F, McJarrow-Keller K, Jorge F, Hyun J, Kim H, Ryu B, Bostina M
Pnas Nexus (2024) 3 pp. pgae416-pgae416 [ DOI: doi:10.1093/pnasnexus/pgae416 Pubmed: 39351541 ]
- Portal protein (gp35) (55 kDa, Protein from Pectobacterium phage PhiM1)
- Pectobacterium phage phim1 (Virus from Pectobacterium phage PhiM1)
- Adaptor protein (gp52) (21 kDa, Protein from Pectobacterium phage PhiM1)
C6 nozzle and fibre complex of the mature bacteriophage PhiM1 particle
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 8vbx
Q-score: 0.535
Eruera AR, Hodgkinson-Bean J, Rutter GL, Hills FR, Kumaran R, Crowe AJM, Jadav N, Chang F, McJarrow-Keller K, Jorge F, Hyun J, Kim H, Ryu B, Bostina M
Pnas Nexus (2024) 3 pp. pgae416-pgae416 [ DOI: doi:10.1093/pnasnexus/pgae416 Pubmed: 39351541 ]
- Tail nozzle (gp51) (84 kDa, Protein from Pectobacterium phage PhiM1)
- Tail fiber (gp47) (55 kDa, Protein from Pectobacterium phage PhiM1)
- Pectobacterium phage phim1 (Virus from Pectobacterium phage PhiM1)
Asymmetric reconstruction of the PhiM1 tail and ejectosome complexes.
Orf virus scaffolding protein Orfv075
Resolution: 1.9 Å
EM Method: Single-particle
Fitted PDBs: 9ikc
Q-score: 0.763
Kim S, Ko S, Kim M, Jang Y, Hyun J
Biochem Biophys Res Commun (2024) 728 pp. 150334-150334 [ Pubmed: 38968773 DOI: doi:10.1016/j.bbrc.2024.150334 ]
- Orfv075 trimer (190 kDa, Complex from Orf virus (strain NZ2))
- Water (18 Da, Ligand)
- 62 kda protein (63 kDa, Protein from Orf virus (strain NZ2))