Cryo-EM structure of APOBEC3G-Vif complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8h0i
Q-score: 0.451
Kouno T, Shibata S, Shigematsu M, Hyun J, Kim TG, Matsuo H, Wolf M
Nat Commun (2023) 14 pp. 4037-4037 [ Pubmed: 37419875 DOI: doi:10.1038/s41467-023-39796-5 ]
- Apobec3g (43 kDa, Protein from Homo sapiens)
- Core binding factor beta (18 kDa, Protein from Homo sapiens)
- Apovec3g (Complex from Human Immunodeficiency virus 1)
- A3g-vc-rna complex (Complex)
- Zinc ion (65 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Rna (5'-r(*cp*gp*gp*up*up*gp*ap*up*cp*gp*up*up*up*up*ap*ap*cp*ap*a)-3') (6 kDa, RNA from synthetic construct)
- Viral infectivity factor (18 kDa, Protein from Human immunodeficiency virus 1)
- Rna (Complex)
- Vif (Complex from Homo sapiens)
Cryo-EM structure of APOBEC3G-Vif complex
Kouno T, Shibata S, Shigematsu M, Hyun J, Kim TG, Matsuo H, Wolf M
Nat Commun (2023) 14 pp. 4037-4037 [ Pubmed: 37419875 DOI: doi:10.1038/s41467-023-39796-5 ]
Cryo-EM structure of APOBEC3G-Vif complex
Kouno T, Shibata S, Shigematsu M, Hyun J, Kim TG, Matsuo H, Wolf M
Nat Commun (2023) 14 pp. 4037-4037 [ Pubmed: 37419875 DOI: doi:10.1038/s41467-023-39796-5 ]
Cryo-EM structure of APOBEC3G-Vif complex
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8j62
Q-score: 0.554
Kouno T, Shibata S, Shigematsu M, Hyun J, Kim TG, Matsuo H, Wolf M
Nat Commun (2023) 14 pp. 4037-4037 [ Pubmed: 37419875 DOI: doi:10.1038/s41467-023-39796-5 ]
- Rna (5'-r(*cp*gp*gp*up*up*gp*ap*up*up*gp*up*up*up*up*ap*ap*cp*ap*a)-3') (6 kDa, RNA from synthetic construct)
- Apobec3g (43 kDa, Protein from Homo sapiens)
- Core binding factor beta (18 kDa, Protein from Homo sapiens)
- Viral infectivity factor (18 kDa, Protein from Human immunodeficiency virus 1)
- A3g-vc-rna complex (Complex)
- Zinc ion (65 Da, Ligand)
- Apobec3g,core binding factor (Complex from Homo sapiens)
- Rna (Complex)
- Viral infectibity factor (Complex from Human immunodeficiency virus 1)
Cryo-EM structure of Vaccinia virus scaffolding protein D13
Resolution: 2.25 Å
EM Method: Single-particle
Fitted PDBs: 7vfd
Q-score: 0.695
Hyun J, Matsunami H, Kim TG, Wolf M
Nat Commun (2022) 13 pp. 1704-1704 [ Pubmed: 35361762 DOI: doi:10.1038/s41467-022-29305-5 ]
- Water (18 Da, Ligand)
- Vaccinia virus scaffolding protein d13 trimer (186 kDa, Complex from Vaccinia virus WR)
- Scaffold protein d13 (61 kDa, Protein from Vaccinia virus (strain Western Reserve))
Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal polyhistidine tag
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 7vfe
Q-score: 0.642
Hyun J, Matsunami H, Kim TG, Wolf M
Nat Commun (2022) 13 pp. 1704-1704 [ Pubmed: 35361762 DOI: doi:10.1038/s41467-022-29305-5 ]
Cryo-EM structure of Vaccinia virus scaffolding protein D13 with N-terminal 17 residue truncation
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7vff
Q-score: 0.444
Hyun J, Matsunami H, Kim TG, Wolf M
Nat Commun (2022) 13 pp. 1704-1704 [ Pubmed: 35361762 DOI: doi:10.1038/s41467-022-29305-5 ]
Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer doublet
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 7vfg
Q-score: 0.415
Hyun J, Matsunami H, Kim TG, Wolf M
Nat Commun (2022) 13 pp. 1704-1704 [ Pubmed: 35361762 DOI: doi:10.1038/s41467-022-29305-5 ]
Cryo-EM structure of Vaccinia virus scaffolding protein D13 tubular assembly
Hyun J, Matsunami H, Kim TG, Wolf M
Nat Commun (2022) 13 pp. 1704-1704 [ Pubmed: 35361762 DOI: doi:10.1038/s41467-022-29305-5 ]
Cryo-EM structure of Vaccinia virus scaffolding protein D13 trimer sextet
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7vfh
Q-score: 0.371
Hyun J, Matsunami H, Kim TG, Wolf M
Nat Commun (2022) 13 pp. 1704-1704 [ Pubmed: 35361762 DOI: doi:10.1038/s41467-022-29305-5 ]