Cryo-EM structure of the aspartate:alanine antiporter AspT WT
Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S
To Be Published
- Aspartic acid (133 Da, Ligand)
- Aspartate:alanine antiporter aspt (58 kDa, Cellular component from Tetragenococcus halophilus)
- Aspartate/alanine antiporter (57 kDa, Protein from Tetragenococcus halophilus)
Cryo-EM structure of the aspartate:alanine antiporter AspT mutant L60C
Resolution: 3.56 Å
EM Method: Single-particle
Fitted PDBs: 8xw5
Q-score: 0.472
Nanatani K, Kanno R, Kawabata T, Watanabe S, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Humbel BM, Inaba K, Mitsuoka K, Guan L, Abe K, Yamamoto M, Koshiba S
To Be Published
Cryo-EM structure of full-length ERGIC-53 in complex with MCFD2
Watanabe S, Kise Y, Yonezawa K, Inoue M, Shimizu N, Nureki O, Inaba K
Nat Commun (2024) 15 [ DOI: 10.1038/s41467-024-46747-1 Pubmed: 38493152 ]
Image sets:
Cryo-EM structure of ERGIC-53 H34 deletion mutant in complex with MCFD2
Watanabe S, Kise Y, Yonezawa K, Inoue M, Shimizu N, Nureki O, Inaba K
Nat Commun (2024) 15 [ DOI: 10.1038/s41467-024-46747-1 Pubmed: 38493152 ]
Image sets:
Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (form A)
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 8jp4
Q-score: 0.496
Watanabe S, Kise Y, Yonezawa K, Inoue M, Shimizu N, Nureki O, Inaba K
Nat Commun (2024) 15 pp. 2404-2404 [ Pubmed: 38493152 DOI: doi:10.1038/s41467-024-46747-1 ]
- Calcium ion (40 Da, Ligand)
- Ergic-53-mcfd2 complex (Complex from Homo sapiens)
- Multiple coagulation factor deficiency protein 2 (13 kDa, Protein from Homo sapiens)
- Protein ergic-53 (58 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Cryo-EM structures of the head region of full-length ERGIC-53 with MCFD2 (form B)
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 8jp5
Q-score: 0.476
Watanabe S, Kise Y, Yonezawa K, Inoue M, Shimizu N, Nureki O, Inaba K
Nat Commun (2024) 15 pp. 2404-2404 [ Pubmed: 38493152 DOI: doi:10.1038/s41467-024-46747-1 ]
- Calcium ion (40 Da, Ligand)
- Ergic-53-mcfd2 complex (Complex from Homo sapiens)
- Multiple coagulation factor deficiency protein 2 (13 kDa, Protein from Homo sapiens)
- Protein ergic-53 (58 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Cryo-EM structures of the head region of full-length ERGIC-53 with MCFD2 (Substate A)
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 8jp6
Q-score: 0.461
Watanabe S, Kise Y, Yonezawa K, Inoue M, Shimizu N, Nureki O, Inaba K
Nat Commun (2024) 15 pp. 2404-2404 [ Pubmed: 38493152 DOI: doi:10.1038/s41467-024-46747-1 ]
- Calcium ion (40 Da, Ligand)
- Ergic-53-mcfd2 complex (Complex from Homo sapiens)
- Multiple coagulation factor deficiency protein 2 (13 kDa, Protein from Homo sapiens)
- Protein ergic-53 (58 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate B)
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 8jp7
Q-score: 0.412
Watanabe S, Kise Y, Yonezawa K, Inoue M, Shimizu N, Nureki O, Inaba K
Nat Commun (2024) 15 pp. 2404-2404 [ Pubmed: 38493152 DOI: doi:10.1038/s41467-024-46747-1 ]
- Calcium ion (40 Da, Ligand)
- Ergic-53-mcfd2 complex (Complex from Homo sapiens)
- Multiple coagulation factor deficiency protein 2 (13 kDa, Protein from Homo sapiens)
- Protein ergic-53 (58 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate C)
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 8jp8
Q-score: 0.413
Watanabe S, Kise Y, Yonezawa K, Inoue M, Shimizu N, Nureki O, Inaba K
Nat Commun (2024) 15 pp. 2404-2404 [ Pubmed: 38493152 DOI: doi:10.1038/s41467-024-46747-1 ]
- Calcium ion (40 Da, Ligand)
- Ergic-53-mcfd2 complex (Complex from Homo sapiens)
- Multiple coagulation factor deficiency protein 2 (13 kDa, Protein from Homo sapiens)
- Protein ergic-53 (58 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (Substate D)
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 8jp9
Q-score: 0.422
Watanabe S, Kise Y, Yonezawa K, Inoue M, Shimizu N, Nureki O, Inaba K
Nat Commun (2024) 15 pp. 2404-2404 [ Pubmed: 38493152 DOI: doi:10.1038/s41467-024-46747-1 ]
- Calcium ion (40 Da, Ligand)
- Ergic-53-mcfd2 complex (Complex from Homo sapiens)
- Multiple coagulation factor deficiency protein 2 (13 kDa, Protein from Homo sapiens)
- Protein ergic-53 (58 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)