Cryo-EM structure of the head region of full-length ERGIC-53 with MCFD2 (form A)
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 8jp4
Q-score: 0.496
Watanabe S, Kise Y, Yonezawa K, Inoue M, Shimizu N, Nureki O, Inaba K
Nat Commun (2024) 15 pp. 2404-2404 [ DOI: doi:10.1038/s41467-024-46747-1 Pubmed: 38493152 ]
- Ergic-53-mcfd2 complex (Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Protein ergic-53 (58 kDa, Protein from Homo sapiens)
- Multiple coagulation factor deficiency protein 2 (13 kDa, Protein from Homo sapiens)
Cryo-EM structures of the head region of full-length ERGIC-53 with MCFD2 (form B)
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 8jp5
Q-score: 0.476
Watanabe S, Kise Y, Yonezawa K, Inoue M, Shimizu N, Nureki O, Inaba K
Nat Commun (2024) 15 pp. 2404-2404 [ DOI: doi:10.1038/s41467-024-46747-1 Pubmed: 38493152 ]
- Ergic-53-mcfd2 complex (Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Protein ergic-53 (58 kDa, Protein from Homo sapiens)
- Multiple coagulation factor deficiency protein 2 (13 kDa, Protein from Homo sapiens)
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 8j7w
Q-score: 0.496
Bui HB, Watanabe S, Nomura N, Liu K, Uemura T, Inoue M, Tsutsumi A, Fujita H, Kinoshita K, Kato Y, Iwata S, Kikkawa M, Inaba K
Nat Commun (2023) 14 pp. 4770-4770 [ Pubmed: 37553324 DOI: doi:10.1038/s41467-023-40521-5 ]
- Zinc ion (65 Da, Ligand)
- Light chain of yn7114-08 fab (24 kDa, Protein from Mus musculus)
- Human znt7-fab complex (Complex from Homo sapiens)
- Zinc transporter 7 (43 kDa, Protein from Homo sapiens)
- Heavy chain of yn7114-08 fab (24 kDa, Protein from Mus musculus)
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8j80
Q-score: 0.504
Bui HB, Watanabe S, Nomura N, Liu K, Uemura T, Inoue M, Tsutsumi A, Fujita H, Kinoshita K, Kato Y, Iwata S, Kikkawa M, Inaba K
Nat Commun (2023) 14 pp. 4770-4770 [ Pubmed: 37553324 DOI: doi:10.1038/s41467-023-40521-5 ]
- Zinc ion (65 Da, Ligand)
- Light chain of yn7114-08 fab (24 kDa, Protein from Mus musculus)
- Human znt7-fab complex (Complex from Homo sapiens)
- Zinc transporter 7 (43 kDa, Protein from Homo sapiens)
- Heavy chain of yn7114-08 fab (24 kDa, Protein from Mus musculus)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6lle
Q-score: 0.576
Zhang Y, Inoue M, Tsutsumi A, Watanabe S, Nishizawa T, Nagata K, Kikkawa M, Inaba K
Sci Adv (2020) 6 pp. eabb0147-eabb0147 [ Pubmed: 32851169 DOI: doi:10.1126/sciadv.abb0147 ]
- Serca2b with acp (110 MDa, Complex from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Sarcoplasmic/endoplasmic reticulum calcium atpase 2 (117 kDa, Protein from Homo sapiens)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6lly
Q-score: 0.561
Zhang Y, Inoue M, Tsutsumi A, Watanabe S, Nishizawa T, Nagata K, Kikkawa M, Inaba K
Sci Adv (2020) 6 pp. eabb0147-eabb0147 [ Pubmed: 32851169 DOI: doi:10.1126/sciadv.abb0147 ]
- Beryllium trifluoride ion (66 Da, Ligand)
- Sarcoplasmic/endoplasmic reticulum calcium atpase 2 (117 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Serca2b with bef3 (110 MDa, Complex from Homo sapiens)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6ln5
Q-score: 0.593
Zhang Y, Inoue M, Tsutsumi A, Watanabe S, Nishizawa T, Nagata K, Kikkawa M, Inaba K
Sci Adv (2020) 6 pp. eabb0147-eabb0147 [ Pubmed: 32851169 DOI: doi:10.1126/sciadv.abb0147 ]
- Calcium ion (40 Da, Ligand)
- Serca2b mutation with amppcp -1 (110 MDa, Complex from Homo sapiens)
- Sarcoplasmic/endoplasmic reticulum calcium atpase 2 (116 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6ln6
Q-score: 0.58
Zhang Y, Inoue M, Tsutsumi A, Watanabe S, Nishizawa T, Nagata K, Kikkawa M, Inaba K
Sci Adv (2020) 6 pp. eabb0147-eabb0147 [ Pubmed: 32851169 DOI: doi:10.1126/sciadv.abb0147 ]
- Calcium ion (40 Da, Ligand)
- Serca2b mutation with amppcp -2 (110 MDa, Complex from Homo sapiens)
- Sarcoplasmic/endoplasmic reticulum calcium atpase 2 (116 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6ln7
Q-score: 0.6
Zhang Y, Inoue M, Tsutsumi A, Watanabe S, Nishizawa T, Nagata K, Kikkawa M, Inaba K
Sci Adv (2020) 6 pp. eabb0147-eabb0147 [ Pubmed: 32851169 DOI: doi:10.1126/sciadv.abb0147 ]
- Calcium ion (40 Da, Ligand)
- Serca2b mutation with amppcp -3 (110 MDa, Complex from Homo sapiens)
- Sarcoplasmic/endoplasmic reticulum calcium atpase 2 (116 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)