bottom segment of the bacteriophage M13 mini variant
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8ixk
Q-score: 0.52
Nat Commun (2023) 14 pp. 5421-5421 [ Pubmed: 37669979 DOI: doi:10.1038/s41467-023-41151-7 ]
- Head virion protein g6p (12 kDa, Protein from Inovirus M13)
- Bottom segment of the bacteriophage m13 mini variant (Complex from Inovirus M13)
- Attachment protein g3p (42 kDa, Protein from Inovirus M13)
- Capsid protein g8p (7 kDa, Protein from Inovirus M13)
top segment of the bacteriophage M13 mini variant
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8ixl
Q-score: 0.487
Nat Commun (2023) 14 pp. 5421-5421 [ Pubmed: 37669979 DOI: doi:10.1038/s41467-023-41151-7 ]
- Capsid protein g8p (5 kDa, Protein from Inovirus M13)
- Tail virion protein g7p (3 kDa, Protein from Inovirus M13)
- Top segment of the bacteriophage m13 mini variant (Complex from Inovirus M13)
- Tail virion protein g9p (3 kDa, Protein from Inovirus M13)
Middle segment of the bacteriophage M13 mini variant
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8ixj
Q-score: 0.544
Nat Commun (2023) 14 pp. 5421-5421 [ Pubmed: 37669979 DOI: doi:10.1038/s41467-023-41151-7 ]
Asymmetric reconstruction of the middle segment of the bacteriophage M13 mini variant
Nat Commun (2023) 14 pp. 5421-5421 [ Pubmed: 37669979 DOI: doi:10.1038/s41467-023-41151-7 ]
Asymmetric reconstruction of bottom segment of the bacteriophage M13 mini variant
Nat Commun (2023) 14 pp. 5421-5421 [ Pubmed: 37669979 DOI: doi:10.1038/s41467-023-41151-7 ]
Full length of the bacteriophage M13 mini variant
Nat Commun (2023) 14 pp. 5421-5421 [ Pubmed: 37669979 DOI: doi:10.1038/s41467-023-41151-7 ]
Asymmetric reconstruction of the full length of the bacteriophage M13 variant
Nat Commun (2023) 14 pp. 5421-5421 [ Pubmed: 37669979 DOI: doi:10.1038/s41467-023-41151-7 ]
- Inovirus m13 (Complex from Inovirus M13)
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7dco
Q-score: 0.408
Bai R, Wan R, Yan C, Jia Q, Lei J, Shi Y
Science (2021) 371 [ DOI: doi:10.1126/science.abe8863 Pubmed: 33243853 ]
- Pre-mrna-splicing factor cwc26 (14 kDa, Protein from Saccharomyces cerevisiae)
- U6 snrna (35 kDa, RNA from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor cwc15 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Pre-mrna-splicing factor prp21 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Bj4_g0056610.mrna.1.cds.1 (12 kDa, Protein from Saccharomyces cerevisiae)
- Small nuclear ribonucleoprotein g (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Bud31 isoform 1 (18 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Pre-mrna-splicing factor cwc2 (29 kDa, Protein from Saccharomyces cerevisiae)
- Hlj1_g0054350.mrna.1.cds.1 (37 kDa, Protein from Saccharomyces cerevisiae)
- Hsh49 isoform 1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Hsh155 isoform 1 (110 kDa, Protein from Saccharomyces cerevisiae)
- Smd1 isoform 1 (16 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna leakage protein 1 (23 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Pre-mrna-splicing factor cwc21 (15 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor cef1 (67 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Small nuclear ribonucleoprotein sm d3 (11 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor slt11 (40 kDa, Protein from Saccharomyces cerevisiae)
- Calcium ion (40 Da, Ligand)
- Pre-mrna-processing factor 19 (56 kDa, Protein from Saccharomyces cerevisiae)
- U2 snrna (376 kDa, RNA from Saccharomyces cerevisiae)
- U5 snrna (68 kDa, RNA from Saccharomyces cerevisiae)
- Small nuclear ribonucleoprotein e (10 kDa, Protein from Saccharomyces cerevisiae)
- Brr2 isoform 1 (246 kDa, Protein from Saccharomyces cerevisiae)
- The activated spliceosome bact complex (Complex from Saccharomyces cerevisiae)
- Bj4_g0027490.mrna.1.cds.1 (12 kDa, Protein from Saccharomyces cerevisiae)
- Bj4_g0014900.mrna.1.cds.1 (22 kDa, Protein from Saccharomyces cerevisiae)
- Sx2_g0027210.mrna.1.cds.1 (14 kDa, Protein from Saccharomyces cerevisiae)
- Cwc27 isoform 1 (35 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-processing protein 45 (42 kDa, Protein from Saccharomyces cerevisiae)
- Sm protein f (9 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Rse1 isoform 1 (153 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor spp2 (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Prp8 isoform 1 (279 kDa, Protein from Saccharomyces cerevisiae)
- Cwc22 isoform 1 (67 kDa, Protein from Saccharomyces cerevisiae)
- Clf1 isoform 1 (82 kDa, Protein from Saccharomyces cerevisiae)
- Hlj1_g0053790.mrna.1.cds.1 (27 kDa, Protein from Saccharomyces cerevisiae)
- Small nuclear ribonucleoprotein sm d3 (8 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor cwc24 (29 kDa, Protein from Saccharomyces cerevisiae)
- Prp9 isoform 1 (63 kDa, Protein from Saccharomyces cerevisiae)
- Syf1 isoform 1 (100 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna (44 kDa, RNA from Saccharomyces cerevisiae)
- Rds3 complex subunit 10 (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Snt309 isoform 1 (20 kDa, Protein from Saccharomyces cerevisiae)
- Pre-mrna-splicing factor atp-dependent rna helicase-like protein prp2 (99 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Water (18 Da, Ligand)
- Snu114 isoform 1 (114 kDa, Protein from Saccharomyces cerevisiae)
- Hlj1_g0043010.mrna.1.cds.1 (27 kDa, Protein from Saccharomyces cerevisiae)
- Inositol hexakisphosphate (660 Da, Ligand)
- Prp11 isoform 1 (29 kDa, Protein from Saccharomyces cerevisiae)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Cdc40 isoform 1 (52 kDa, Protein from Saccharomyces cerevisiae)
- Bj4_g0037700.mrna.1.cds.1 (12 kDa, Protein from Saccharomyces cerevisiae)
cryo-EM structure of the DEAH-box helicase Prp2 and coactivator Spp2
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 7dcp
Q-score: 0.545
Bai R, Wan R, Yan C, Jia Q, Lei J, Shi Y
Science (2021) 371 [ DOI: doi:10.1126/science.abe8863 Pubmed: 33243853 ]
- Magnesium ion (24 Da, Ligand)
- Prp2 isoform 1 (97 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Pre-mrna-splicing factor spp2 (20 kDa, Protein from Saccharomyces cerevisiae)
- Complex of atpase/helicase prp2 and its coactivator spp2 (119 MDa, Complex from Saccharomyces cerevisiae)
cryo-EM structure of the DEAH-box helicase Prp2
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7dcq
Q-score: 0.522
Bai R, Wan R, Yan C, Jia Q, Lei J, Shi Y
Science (2021) 371 [ DOI: doi:10.1126/science.abe8863 Pubmed: 33243853 ]
- Deah-box atpase/helicase prp2 (101 MDa, Complex from Saccharomyces cerevisiae)
- Prp2 isoform 1 (99 kDa, Protein from Saccharomyces cerevisiae)